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protocols::frag_picker::scores::MakePhiPsiRmsd Class Reference

Matker class that produces a new PhiPsiRmsd object. More...

#include <PhiPsiRmsd.hh>

Inheritance diagram for protocols::frag_picker::scores::MakePhiPsiRmsd:
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Public Member Functions

 MakePhiPsiRmsd ()
 
FragmentScoringMethodOP make (core::Size, core::Real, bool, FragmentPickerOP, std::string) override
 Creates a PhiPsiRmsd scoring method. More...
 
- Public Member Functions inherited from protocols::frag_picker::scores::MakeFragmentScoringMethod
 MakeFragmentScoringMethod (std::string name)
 
std::string & get_score_name ()
 

Detailed Description

Matker class that produces a new PhiPsiRmsd object.

Constructor & Destructor Documentation

protocols::frag_picker::scores::MakePhiPsiRmsd::MakePhiPsiRmsd ( )
inline

Member Function Documentation

FragmentScoringMethodOP protocols::frag_picker::scores::MakePhiPsiRmsd::make ( core::Size  priority,
core::Real  lowest_acceptable_value,
bool  use_lowest,
FragmentPickerOP  ,
std::string  input_file 
)
overridevirtual

Creates a PhiPsiRmsd scoring method.

Parameters
priority- priority of the scoring method. The higher value the earlier the score will be evaluated
lowest_acceptable_value- if a calculated score is higher than this value, fragment will be neglected
FragmentPickerOPobject - not used
line- the relevant line extracted from the scoring configuration file that defines this scoring method It could look like: "PhiPsiRmsd 140 -5.0 100.0 additional_string" where 140, -5.0 && 100.0 are priority, weight && treshold, respectively. The additional string may be:
  • empty: then the maker tries to create a scoring object from a TALOS file trying in::file::talos_phi_psi flag. If fails, will try to use a pose from in::file::s
  • a pdb file, pdb extension is necessary. This will create a pose && steal Phi && Psi
  • a TALOS file with Phi/Psi prediction (tab extension is necessary)

Implements protocols::frag_picker::scores::MakeFragmentScoringMethod.

References core::conformation::membrane::in, core::import_pose::PDB_file, core::import_pose::pose_from_file(), protocols::frag_picker::scores::trPhiPsiRmsd(), and protocols::frag_picker::PhiPsiTalosIO::write().


The documentation for this class was generated from the following files: