Rosetta  2021.16
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Namespaces | Functions
InterfaceAnalyzerMover.cc File Reference

InterfaceAnalyzerMover implementation - class for in-depth interface quality analysis. More...

#include <protocols/analysis/InterfaceAnalyzerMover.hh>
#include <protocols/analysis/InterfaceAnalyzerMoverCreator.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/sc/ShapeComplementarityCalculator.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/chains_util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/kinematics/util.hh>
#include <protocols/jd2/util.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/toolbox/rigid_body/util.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/pose/metrics/simple_calculators/SasaCalculator2.hh>
#include <core/pose/metrics/simple_calculators/InterfaceNeighborDefinitionCalculator.hh>
#include <core/pose/metrics/simple_calculators/InterfaceSasaDefinitionCalculator.hh>
#include <core/pose/metrics/simple_calculators/InterfaceDeltaEnergeticsCalculator.hh>
#include <protocols/simple_pose_metric_calculators/NumberHBondsCalculator.hh>
#include <protocols/simple_pose_metric_calculators/BuriedUnsatisfiedPolarsCalculator.hh>
#include <protocols/toolbox/CalcInterNeighborGroup.hh>
#include <core/scoring/packstat/compute_sasa.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/MetricValue.hh>
#include <basic/options/keys/packstat.OptionKeys.gen.hh>
#include <utility>
#include <utility/file/FileName.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <sstream>
#include <set>
#include <string>
#include <numeric>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::analysis
 

Functions

static basic::Tracer TR ("protocols.analysis.InterfaceAnalyzerMover")
 
static basic::Tracer TRinterface ("protocols.analysis.InterfaceAnalyzerMover.interface_selection")
 
static basic::Tracer TRhbonds ("protocols.analysis.InterfaceAnalyzerMover.missing_hbonds")
 
std::ostream & which_ostream (std::ostream &ost, std::ostream &oss, bool const tracer)
 stupid helper function needed because ternary operator does not allow variable return types More...
 

Detailed Description

InterfaceAnalyzerMover implementation - class for in-depth interface quality analysis.

Author
Steven Lewis, Bryan Der, Ben Stranges, Jared Adolf-Bryfogle

Function Documentation

static basic::Tracer TR ( "protocols.analysis.InterfaceAnalyzerMover"  )
static
static basic::Tracer TRhbonds ( "protocols.analysis.InterfaceAnalyzerMover.missing_hbonds"  )
static
static basic::Tracer TRinterface ( "protocols.analysis.InterfaceAnalyzerMover.interface_selection"  )
static
std::ostream& which_ostream ( std::ostream &  ost,
std::ostream &  oss,
bool const  tracer 
)

stupid helper function needed because ternary operator does not allow variable return types