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ExtendedPoseBuilder.cc File Reference

Builds a pose using a blueprint from a structure architect. More...

#include <protocols/denovo_design/components/ExtendedPoseBuilder.hh>
#include <protocols/denovo_design/components/FoldGraph.hh>
#include <protocols/denovo_design/components/Segment.hh>
#include <protocols/denovo_design/components/StructureData.hh>
#include <protocols/denovo_design/components/StructureDataFactory.hh>
#include <protocols/denovo_design/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/kinematics/FoldTree.hh>
#include <basic/Tracer.hh>
#include <iterator>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::denovo_design
 
 protocols::denovo_design::components
 

Functions

static basic::Tracer TR ("protocols.denovo_design.components.ExtendedPoseBuilder")
 
std::string protocols::denovo_design::components::create_debug_filename (std::string const &file_prefix, core::Size const index, std::string const &file_suffix)
 
void protocols::denovo_design::components::add_terminus_variants (core::pose::Pose &pose, ExtendedPoseBuilder::Resids const &endings)
 
core::conformation::ResidueOP protocols::denovo_design::components::rsd_op (core::pose::Pose const &pose, std::string const &res_type)
 helper function to create a ValineOP in the same typeset as the pose More...
 
void protocols::denovo_design::components::append_new_chain_from_template_segment (core::pose::Pose &pose, Segment const &segment)
 
void protocols::denovo_design::components::append_residues_from_template_segment (core::pose::Pose &pose, Segment const &prev_segment, Segment const &segment)
 
core::kinematics::FoldTree protocols::denovo_design::components::modify_ft_for_residue_insertion (core::pose::Pose &pose, core::Size const safe_res)
 modifies teh ft in the pose, returns the original More...
 
void protocols::denovo_design::components::set_dihedrals (core::pose::Pose &pose, core::Size const resid, ResidueDihedrals const &dihedrals)
 
void protocols::denovo_design::components::prepend_new_residues (core::pose::Pose &pose, core::Size num_residues, core::Size insert_pos, core::Size const , std::string const &type, ResidueDihedrals const &lower_dihedrals)
 
void protocols::denovo_design::components::append_new_residues (core::pose::Pose &pose, core::Size num_residues, core::Size insert_pos, core::Size const, std::string const &type, ResidueDihedrals const &upper_dihedrals)
 

Detailed Description

Builds a pose using a blueprint from a structure architect.

Author
Tom Linsky (tlins.nosp@m.ky@u.nosp@m.w.edu)

Function Documentation

static basic::Tracer TR ( "protocols.denovo_design.components.ExtendedPoseBuilder"  )
static