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protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer Class Reference

#include <StepWiseRNA_Clusterer.hh>

Inheritance diagram for protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer:
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Public Member Functions

 StepWiseRNA_Clusterer (utility::vector1< std::string > const &silent_files_in)
 
 StepWiseRNA_Clusterer (std::string const &silent_file_in)
 
 StepWiseRNA_Clusterer (core::io::silent::SilentFileDataOP &sfd)
 
 ~StepWiseRNA_Clusterer () override
 
void set_max_decoys (core::Size const &setting)
 Filter a list of poses by score. More...
 
void set_score_diff_cut (core::Real const &setting)
 
void set_perform_score_diff_cut (bool const &setting)
 
void set_cluster_radius (core::Real const &setting)
 
void set_suite_cluster_radius (core::Real const &setting)
 
void set_loop_cluster_radius (core::Real const &setting)
 
void set_rename_tags (core::Real const &setting)
 
void set_distinguish_pucker (core::Real const &setting)
 
void set_add_lead_zero_to_tag (core::Real const &setting)
 
void set_working_parameters (protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP &working_parameters)
 
void set_working_parameters_exist (bool const working_parameters_exist)
 
void set_quick_alignment (bool const &setting)
 
void set_align_only_over_base_atoms (bool const &setting)
 
void set_optimize_memory_usage (bool const &setting)
 
void set_keep_pose_in_memory (bool const &setting)
 
void set_two_stage_clustering (bool const &setting)
 
void set_verbose (bool const &setting)
 
void cluster ()
 
void output_silent_file (std::string const &silent_file)
 
void recalculate_rmsd_and_output_silent_file (std::string const &silent_file, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetupOP &stepwise_rna_pose_setup, bool const write_score_only)
 
void get_best_neighboring_shift_RMSD_and_output_silent_file (std::string const &silent_file)
 
void set_PBP_clustering_at_chain_closure (bool const &setting)
 
void set_skip_clustering (bool const &setting)
 
void set_filter_virtual_res_list (utility::vector1< core::Size > const &setting)
 
void set_perform_VDW_rep_screen (bool const &setting)
 
void set_perform_filters (bool const &setting)
 
void set_min_num_south_sugar_filter (core::Size const &setting)
 
void set_VDW_rep_screen_info (utility::vector1< std::string > const &setting)
 
void set_user_input_VDW_bin_checker (protocols::stepwise::modeler::rna::checker::RNA_VDW_BinCheckerOP const &user_input_VDW_bin_checker)
 
void set_full_length_loop_rmsd_clustering (bool const &setting)
 
void set_ignore_FARFAR_no_auto_bulge_tag (bool const &setting)
 
void set_ignore_FARFAR_no_auto_bulge_parent_tag (bool const &setting)
 
void set_ignore_unmatched_virtual_res (bool const &setting)
 
void set_output_pdb (bool const setting)
 

Private Member Functions

void initialize_parameters_and_input ()
 
void create_silent_file_and_tag_list ()
 
void do_some_clustering ()
 
void two_stage_clustering ()
 
void create_large_cluster_centers_member_list ()
 
bool is_old_individual_suite_cluster (core::pose::Pose const &current_pose, core::pose::Pose const &cluster_center_pose, utility::vector1< core::Size > const &calc_rms_res, std::map< core::Size, core::Size > const &full_to_sub, std::map< core::Size, bool > const &is_prepend_map, core::Real const &cluster_radius) const
 
core::pose::PoseOP get_poseOP (core::Size const n)
 
void setup_fail_triangle_inequailty_list (core::pose::Pose &current_pose, std::string const &tag, utility::vector1< bool > &fail_triangle_inequality_list)
 
bool is_new_cluster_center_with_working_parameters (core::pose::PoseOP const &pose_op, std::string const &tag)
 
bool check_for_closeness_without_working_parameters (core::pose::PoseOP const &pose_op)
 
bool check_for_closeness (core::pose::PoseOP const &pose_op, std::string const &tag)
 
utility::vector1< core::Size >
const & 
get_act_alignment_res () const
 
utility::vector1< core::Size >
const & 
get_act_calc_rms_res () const
 
std::map< core::Size,
core::Size > const & 
get_act_full_to_sub () const
 
std::map< core::Size, bool >
const & 
get_act_is_prepend_map () const
 
void initialize_quick_alignment_pose ()
 
void initialize_max_memory_pose_num ()
 
void align_to_quick_alignment_pose (core::pose::Pose &pose, std::string const &tag) const
 
void initialize_VDW_rep_checker ()
 
void create_tags_map ()
 
bool pass_FARFAR_no_auto_bulge_filter (core::io::silent::SilentStructOP const &silent_struct) const
 

Private Attributes

utility::vector1< std::string > silent_files_
 
core::import_pose::pose_stream::SilentFilePoseInputStreamOP input_
 
utility::vector1
< core::pose::PoseOP
pose_output_list_
 
utility::vector1< std::string > tag_output_list_
 
utility::vector1
< core::io::silent::SilentStructOP
silent_struct_output_list_
 
core::Size max_decoys_
 
core::Real score_diff_cut_
 
bool perform_score_diff_cut_
 
core::Real whole_struct_cluster_radius_
 
core::Real suite_cluster_radius_
 
core::Real loop_cluster_radius_
 
bool rename_tags_
 
protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP working_parameters_
 
bool working_parameters_exist_
 
bool distinguish_pucker_
 
bool add_lead_zero_to_tag_
 
bool quick_alignment_
 
bool align_only_over_base_atoms_
 
bool optimize_memory_usage_
 
SlicedPoseWorkingParameters sliced_pose_job_params_
 
bool verbose_
 
bool keep_pose_in_memory_
 
bool keep_pose_in_memory_hydrid_
 
core::Size max_memory_pose_num_
 
bool two_stage_clustering_
 
bool use_triangle_inequality_
 
core::pose::Pose first_pose_
 
utility::vector1
< utility::vector1
< Cluster_Member > > 
cluster_centers_neighbor_list_
 
utility::vector1
< core::pose::PoseOP
large_cluster_pose_list_
 
utility::vector1< core::Sizeall_pose_to_output_pose_ID_map_
 
bool PBP_clustering_at_chain_closure_
 
bool quick_alignment_pose_is_intialized_
 
core::pose::Pose quick_alignment_pose_
 
std::string quick_alignment_tag_
 
bool skip_clustering_
 
protocols::stepwise::modeler::rna::checker::RNA_VDW_BinCheckerOP user_input_VDW_bin_checker_
 
bool perform_VDW_rep_screen_
 
bool perform_filters_
 
core::Size min_num_south_sugar_filter_
 
utility::vector1< std::string > VDW_rep_screen_info_
 
bool full_length_loop_rmsd_clustering_
 
utility::vector1< core::Sizefilter_virtual_res_list_
 
std::map< std::string, boolcurrent_tags_map_
 
std::map< std::string, boolparent_tags_map_
 
bool ignore_FARFAR_no_auto_bulge_parent_tag_
 
bool ignore_FARFAR_no_auto_bulge_tag_
 
bool ignore_unmatched_virtual_res_
 
bool output_pdb_
 
core::chemical::ResidueTypeSetCAP rsd_set_
 

Constructor & Destructor Documentation

protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::StepWiseRNA_Clusterer ( utility::vector1< std::string > const &  silent_files_in)
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::StepWiseRNA_Clusterer ( std::string const &  silent_file_in)
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::StepWiseRNA_Clusterer ( core::io::silent::SilentFileDataOP sfd)
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::~StepWiseRNA_Clusterer ( )
overridedefault

Member Function Documentation

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::align_to_quick_alignment_pose ( core::pose::Pose pose,
std::string const &  tag 
) const
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::check_for_closeness ( core::pose::PoseOP const &  pose_op,
std::string const &  tag 
)
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::check_for_closeness_without_working_parameters ( core::pose::PoseOP const &  pose_op)
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::cluster ( )
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::create_large_cluster_centers_member_list ( )
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::create_silent_file_and_tag_list ( )
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::create_tags_map ( )
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::do_some_clustering ( )
private
utility::vector1< core::Size > const & protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::get_act_alignment_res ( ) const
private
utility::vector1< core::Size > const & protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::get_act_calc_rms_res ( ) const
private
std::map< core::Size, core::Size > const & protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::get_act_full_to_sub ( ) const
private
std::map< core::Size, bool > const & protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::get_act_is_prepend_map ( ) const
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::get_best_neighboring_shift_RMSD_and_output_silent_file ( std::string const &  silent_file)
core::pose::PoseOP protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::get_poseOP ( core::Size const  n)
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::initialize_max_memory_pose_num ( )
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::initialize_parameters_and_input ( )
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::initialize_quick_alignment_pose ( )
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::initialize_VDW_rep_checker ( )
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::is_new_cluster_center_with_working_parameters ( core::pose::PoseOP const &  pose_op,
std::string const &  tag 
)
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::is_old_individual_suite_cluster ( core::pose::Pose const &  current_pose,
core::pose::Pose const &  cluster_center_pose,
utility::vector1< core::Size > const &  calc_rms_res,
std::map< core::Size, core::Size > const &  full_to_sub,
std::map< core::Size, bool > const &  is_prepend_map,
core::Real const &  cluster_radius 
) const
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::output_silent_file ( std::string const &  silent_file)
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::pass_FARFAR_no_auto_bulge_filter ( core::io::silent::SilentStructOP const &  silent_struct) const
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::recalculate_rmsd_and_output_silent_file ( std::string const &  silent_file,
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetupOP stepwise_rna_pose_setup,
bool const  write_score_only 
)
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_add_lead_zero_to_tag ( core::Real const &  setting)
inline

References add_lead_zero_to_tag_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_align_only_over_base_atoms ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_cluster_radius ( core::Real const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_distinguish_pucker ( core::Real const &  setting)
inline

References distinguish_pucker_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_filter_virtual_res_list ( utility::vector1< core::Size > const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_full_length_loop_rmsd_clustering ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_ignore_FARFAR_no_auto_bulge_parent_tag ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_ignore_FARFAR_no_auto_bulge_tag ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_ignore_unmatched_virtual_res ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_keep_pose_in_memory ( bool const &  setting)
inline

References keep_pose_in_memory_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_loop_cluster_radius ( core::Real const &  setting)
inline

References loop_cluster_radius_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_max_decoys ( core::Size const &  setting)
inline

Filter a list of poses by score.

References max_decoys_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_min_num_south_sugar_filter ( core::Size const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_optimize_memory_usage ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_output_pdb ( bool const  setting)
inline

References output_pdb_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_PBP_clustering_at_chain_closure ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_perform_filters ( bool const &  setting)
inline

References perform_filters_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_perform_score_diff_cut ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_perform_VDW_rep_screen ( bool const &  setting)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_quick_alignment ( bool const &  setting)
inline

References quick_alignment_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_rename_tags ( core::Real const &  setting)
inline

References rename_tags_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_score_diff_cut ( core::Real const &  setting)
inline

References score_diff_cut_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_skip_clustering ( bool const &  setting)
inline

References skip_clustering_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_suite_cluster_radius ( core::Real const &  setting)
inline

References suite_cluster_radius_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_two_stage_clustering ( bool const &  setting)
inline

References two_stage_clustering_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_user_input_VDW_bin_checker ( protocols::stepwise::modeler::rna::checker::RNA_VDW_BinCheckerOP const &  user_input_VDW_bin_checker)
inline
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_VDW_rep_screen_info ( utility::vector1< std::string > const &  setting)
inline

References VDW_rep_screen_info_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_verbose ( bool const &  setting)
inline

References verbose_.

void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_working_parameters ( protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP working_parameters)
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::set_working_parameters_exist ( bool const  working_parameters_exist)
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::setup_fail_triangle_inequailty_list ( core::pose::Pose current_pose,
std::string const &  tag,
utility::vector1< bool > &  fail_triangle_inequality_list 
)
private
void protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::two_stage_clustering ( )
private

Member Data Documentation

bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::add_lead_zero_to_tag_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::align_only_over_base_atoms_
private
utility::vector1< core::Size > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::all_pose_to_output_pose_ID_map_
private
utility::vector1< utility::vector1< Cluster_Member > > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::cluster_centers_neighbor_list_
private
std::map< std::string, bool > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::current_tags_map_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::distinguish_pucker_
private

Referenced by set_distinguish_pucker().

utility::vector1< core::Size > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::filter_virtual_res_list_
private
core::pose::Pose protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::first_pose_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::full_length_loop_rmsd_clustering_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::ignore_FARFAR_no_auto_bulge_parent_tag_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::ignore_FARFAR_no_auto_bulge_tag_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::ignore_unmatched_virtual_res_
private
core::import_pose::pose_stream::SilentFilePoseInputStreamOP protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::input_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::keep_pose_in_memory_
private

Referenced by set_keep_pose_in_memory().

bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::keep_pose_in_memory_hydrid_
private
utility::vector1< core::pose::PoseOP > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::large_cluster_pose_list_
private
core::Real protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::loop_cluster_radius_
private

Referenced by set_loop_cluster_radius().

core::Size protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::max_decoys_
private

Referenced by set_max_decoys().

core::Size protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::max_memory_pose_num_
private
core::Size protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::min_num_south_sugar_filter_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::optimize_memory_usage_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::output_pdb_
private

Referenced by set_output_pdb().

std::map< std::string, bool > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::parent_tags_map_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::PBP_clustering_at_chain_closure_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::perform_filters_
private

Referenced by set_perform_filters().

bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::perform_score_diff_cut_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::perform_VDW_rep_screen_
private
utility::vector1< core::pose::PoseOP > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::pose_output_list_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::quick_alignment_
private

Referenced by set_quick_alignment().

core::pose::Pose protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::quick_alignment_pose_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::quick_alignment_pose_is_intialized_
private
std::string protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::quick_alignment_tag_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::rename_tags_
private

Referenced by set_rename_tags().

core::chemical::ResidueTypeSetCAP protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::rsd_set_
private
core::Real protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::score_diff_cut_
private

Referenced by set_score_diff_cut().

utility::vector1< std::string > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::silent_files_
private
utility::vector1< core::io::silent::SilentStructOP > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::silent_struct_output_list_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::skip_clustering_
private

Referenced by set_skip_clustering().

SlicedPoseWorkingParameters protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::sliced_pose_job_params_
private
core::Real protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::suite_cluster_radius_
private
utility::vector1< std::string > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::tag_output_list_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::two_stage_clustering_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::use_triangle_inequality_
private
protocols::stepwise::modeler::rna::checker::RNA_VDW_BinCheckerOP protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::user_input_VDW_bin_checker_
private
utility::vector1< std::string > protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::VDW_rep_screen_info_
private

Referenced by set_VDW_rep_screen_info().

bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::verbose_
private

Referenced by set_verbose().

core::Real protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::whole_struct_cluster_radius_
private

Referenced by set_cluster_radius().

protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::working_parameters_
private
bool protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer::working_parameters_exist_
private

The documentation for this class was generated from the following files: