protocols::stepwise::monte_carlo::mover::TransientCutpointHandler Class Reference

#include <TransientCutpointHandler.hh>

Inheritance diagram for protocols::stepwise::monte_carlo::mover::TransientCutpointHandler:

Public Member Functions
	TransientCutpointHandler (core::Size const sample_res)
	TransientCutpointHandler (core::Size const sample_suite, core::Size const cutpoint_suite, bool const change_foldtree=true)
	~TransientCutpointHandler () override
void	put_in_cutpoints (core::pose::Pose &pose)
void	take_out_cutpoints (core::pose::Pose &pose)
void	set_minimize_res (utility::vector1< core::Size > const &setting)
void	set_move_jump_points_away (bool const &setting)
bool	move_jump_points_away () const

Private Member Functions
void	prepare_fold_tree_for_erraser (core::pose::Pose &pose)

Private Attributes
core::Size const	sample_suite_
core::Size const	cutpoint_suite_
bool	move_jump_points_away_
utility::vector1< core::Size >	fixed_res_
utility::vector1< core::Size >	minimize_res_
core::Size	jump_start_
core::Size	jump_end_
bool	change_foldtree_

Constructor & Destructor Documentation

TransientCutpointHandler() [1/2]

protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::TransientCutpointHandler

(

core::Size const

sample_res

)

TransientCutpointHandler() [2/2]

protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::TransientCutpointHandler	(	core::Size const	sample_suite,
		core::Size const	cutpoint_suite,
		bool const	change_foldtree = true
	)

~TransientCutpointHandler()

protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::~TransientCutpointHandler ( )

overridedefault

Member Function Documentation

move_jump_points_away()

bool protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::move_jump_points_away ( ) const

inline

References move_jump_points_away_.

prepare_fold_tree_for_erraser()

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::prepare_fold_tree_for_erraser ( core::pose::Pose &  pose )

private

References cutpoint_suite_, core::chemical::rna::default_jump_atom(), core::pose::Pose::fold_tree(), core::kinematics::FoldTree::is_cutpoint(), jump_end_, core::kinematics::FoldTree::jump_nr(), jump_start_, minimize_res_, move_jump_points_away_, core::kinematics::FoldTree::new_jump(), core::pose::Pose::residue_type(), sample_suite_, core::kinematics::FoldTree::set_jump_atoms(), core::pose::Pose::size(), and protocols::TR().

Referenced by put_in_cutpoints().

put_in_cutpoints()

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::put_in_cutpoints

(

core::pose::Pose &

pose

)

References core::pose::rna::apply_suite_torsion_info(), core::id::BB, change_foldtree_, core::pose::correctly_add_cutpoint_variants(), cutpoint_suite_, core::pose::rna::get_suite_torsion_info(), core::chemical::ResidueTypeBase::is_peptoid(), core::chemical::ResidueTypeBase::is_protein(), core::chemical::ResidueTypeBase::is_RNA(), core::chemical::ResidueType::is_TNA(), prepare_fold_tree_for_erraser(), core::pose::Pose::residue_type(), core::pose::Pose::set_torsion(), core::pose::Pose::torsion(), and viewer_pose.

Referenced by protocols::stepwise::monte_carlo::mover::ResampleMover::apply().

set_minimize_res()

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::set_minimize_res ( utility::vector1< core::Size > const &  setting )

inline

References minimize_res_.

Referenced by protocols::stepwise::monte_carlo::mover::ResampleMover::apply().

set_move_jump_points_away()

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::set_move_jump_points_away ( bool const &  setting )

inline

References move_jump_points_away_.

take_out_cutpoints()

void protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::take_out_cutpoints

(

core::pose::Pose &

pose

)

References change_foldtree_, core::chemical::CUTPOINT_LOWER, cutpoint_suite_, core::chemical::CUTPOINT_UPPER, core::kinematics::FoldTree::delete_jump_and_intervening_cutpoint(), core::pose::Pose::fold_tree(), core::chemical::ResidueTypeBase::is_peptoid(), core::chemical::ResidueTypeBase::is_protein(), core::chemical::ResidueTypeBase::is_RNA(), core::chemical::ResidueType::is_TNA(), jump_end_, jump_start_, core::pose::remove_variant_type_from_pose_residue(), core::pose::Pose::residue_type(), and viewer_pose.

Referenced by protocols::stepwise::monte_carlo::mover::ResampleMover::apply().

Member Data Documentation

change_foldtree_

bool protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::change_foldtree_

private

Referenced by put_in_cutpoints(), and take_out_cutpoints().

cutpoint_suite_

core::Size const protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::cutpoint_suite_

private

Referenced by prepare_fold_tree_for_erraser(), put_in_cutpoints(), and take_out_cutpoints().

fixed_res_

utility::vector1< core::Size > protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::fixed_res_

private

jump_end_

core::Size protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::jump_end_

private

Referenced by prepare_fold_tree_for_erraser(), and take_out_cutpoints().

jump_start_

core::Size protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::jump_start_

private

Referenced by prepare_fold_tree_for_erraser(), and take_out_cutpoints().

minimize_res_

utility::vector1< core::Size > protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::minimize_res_

private

Referenced by prepare_fold_tree_for_erraser(), and set_minimize_res().

move_jump_points_away_

bool protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::move_jump_points_away_

private

Referenced by move_jump_points_away(), prepare_fold_tree_for_erraser(), and set_move_jump_points_away().

sample_suite_

core::Size const protocols::stepwise::monte_carlo::mover::TransientCutpointHandler::sample_suite_

private

Referenced by prepare_fold_tree_for_erraser().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/monte_carlo/mover/TransientCutpointHandler.hh
• src/protocols/stepwise/monte_carlo/mover/TransientCutpointHandler.cc