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Namespaces | Functions
PairingLibrary.cc File Reference
#include <protocols/jumping/PairingLibrary.hh>
#include <protocols/jumping/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/types.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/Stub.hh>
#include <core/id/NamedStubID.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/SingleResidueFragData.fwd.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/fragment/JumpSRFD.hh>
#include <core/fragment/JumpingFrame.hh>
#include <core/scoring/dssp/PairingsList.hh>
#include <ObjexxFCL/FArray2A.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <utility/thread/threadsafe_creation.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzMatrix.fwd.hh>
#include <numeric/xyz.functions.hh>
#include <cstdlib>
#include <string>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::jumping
 

Functions

static basic::Tracer tr ("protocols.jumping")
 
void protocols::jumping::get_coordinate_system (numeric::xyzMatrix_double const &p, numeric::xyzMatrix_double &m)
 
void protocols::jumping::get_ncac (FArray2A_float pos, numeric::xyzMatrix_double &p)
 
numeric::xyzMatrix_double protocols::jumping::get_ncac (FArray2A_float pos)
 
RT protocols::jumping::RT_from_epos (FArray2A_float Epos1, FArray2A_float Epos2)
 

Function Documentation

static basic::Tracer tr ( "protocols.jumping"  )
static
Author
Bjorn Wallner
Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)