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Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::task_operations::PruneBuriedUnsatsOperation Class Reference

#include <PruneBuriedUnsatsOperation.hh>

Inheritance diagram for protocols::task_operations::PruneBuriedUnsatsOperation:
Inheritance graph
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Public Member Functions

 PruneBuriedUnsatsOperation ()
 default constructor More...
 
 PruneBuriedUnsatsOperation (PruneBuriedUnsatsOperation const &other)
 copy constructor More...
 
 ~PruneBuriedUnsatsOperation () override
 destructor More...
 
PruneBuriedUnsatsOperationoperator= (PruneBuriedUnsatsOperation const &other)
 
core::pack::task::operation::TaskOperationOP clone () const override
 make clone More...
 
void apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
 apply More...
 
void parse_tag (TagCOP tag, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
bool allow_even_trades () const
 
core::Real atomic_depth_probe_radius () const
 
core::Real atomic_depth_resolution () const
 
core::Real atomic_depth_cutoff () const
 
core::Real minimum_hbond_energy () const
 
void allow_even_trades (bool allow_even_trades)
 
void atomic_depth_probe_radius (core::Real atomic_depth_probe_radius)
 
void atomic_depth_resolution (core::Real atomic_depth_resolution)
 
void atomic_depth_cutoff (core::Real atomic_depth_cutoff)
 
void minimum_hbond_energy (core::Real minimum_hbond_energy)
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual bool task_operation_provides_citation_info () const
 Does this task operation provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool task_operation_is_unpublished () const
 Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

bool allow_even_trades_
 Allow residues that satisfy an unsat and create a new unsatisfiable one. More...
 
core::Real atomic_depth_probe_radius_
 
core::Real atomic_depth_resolution_
 
core::Real atomic_depth_cutoff_
 
core::Real minimum_hbond_energy_
 
core::scoring::ScoreFunctionOP scorefxn_sc_
 
core::scoring::ScoreFunctionOP scorefxn_bb_
 

Additional Inherited Members

- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Constructor & Destructor Documentation

protocols::task_operations::PruneBuriedUnsatsOperation::PruneBuriedUnsatsOperation ( )
protocols::task_operations::PruneBuriedUnsatsOperation::PruneBuriedUnsatsOperation ( PruneBuriedUnsatsOperation const &  other)

copy constructor

default constructor

protocols::task_operations::PruneBuriedUnsatsOperation::~PruneBuriedUnsatsOperation ( )
overridedefault

destructor

Member Function Documentation

bool protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades ( ) const
inline

References allow_even_trades_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades ( bool  allow_even_trades)
inline
void protocols::task_operations::PruneBuriedUnsatsOperation::apply ( core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
) const
overridevirtual
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff ( ) const
inline

References atomic_depth_cutoff_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff ( core::Real  atomic_depth_cutoff)
inline
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius ( ) const
inline

References atomic_depth_probe_radius_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius ( core::Real  atomic_depth_probe_radius)
inline
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution ( ) const
inline

References atomic_depth_resolution_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution ( core::Real  atomic_depth_resolution)
inline
core::pack::task::operation::TaskOperationOP protocols::task_operations::PruneBuriedUnsatsOperation::clone ( ) const
overridevirtual

make clone

clone

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::PruneBuriedUnsatsOperation::keyname ( )
inlinestatic
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy ( ) const
inline

References minimum_hbond_energy_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy ( core::Real  minimum_hbond_energy)
inline
PruneBuriedUnsatsOperation & protocols::task_operations::PruneBuriedUnsatsOperation::operator= ( PruneBuriedUnsatsOperation const &  other)
void protocols::task_operations::PruneBuriedUnsatsOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_even_trades(), atomic_depth_cutoff(), atomic_depth_probe_radius(), atomic_depth_resolution(), and minimum_hbond_energy().

void protocols::task_operations::PruneBuriedUnsatsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static

Member Data Documentation

bool protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades_
private

Allow residues that satisfy an unsat and create a new unsatisfiable one.

Referenced by allow_even_trades(), apply(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff_
private
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius_
private
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution_
private
core::Real protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy_
private
core::scoring::ScoreFunctionOP protocols::task_operations::PruneBuriedUnsatsOperation::scorefxn_bb_
private
core::scoring::ScoreFunctionOP protocols::task_operations::PruneBuriedUnsatsOperation::scorefxn_sc_
private

The documentation for this class was generated from the following files: