#include <PruneBuriedUnsatsOperation.hh>

Inheritance diagram for protocols::task_operations::PruneBuriedUnsatsOperation:

Public Member Functions
	PruneBuriedUnsatsOperation ()
	default constructor More...

	PruneBuriedUnsatsOperation (PruneBuriedUnsatsOperation const &other)
	copy constructor More...

	~PruneBuriedUnsatsOperation () override
	destructor More...

PruneBuriedUnsatsOperation &	operator= (PruneBuriedUnsatsOperation const &other)

core::pack::task::operation::TaskOperationOP	clone () const override
	make clone More...

void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const override
	apply More...

void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...

bool	allow_even_trades () const

core::Real	atomic_depth_probe_radius () const

core::Real	atomic_depth_resolution () const

core::Real	atomic_depth_cutoff () const

core::Real	minimum_hbond_energy () const

void	allow_even_trades (bool allow_even_trades)

void	atomic_depth_probe_radius (core::Real atomic_depth_probe_radius)

void	atomic_depth_resolution (core::Real atomic_depth_resolution)

void	atomic_depth_cutoff (core::Real atomic_depth_cutoff)

void	minimum_hbond_energy (core::Real minimum_hbond_energy)

Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override

virtual bool	task_operation_provides_citation_info () const
	Does this task operation provide information about how to cite it? More...

virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...

virtual bool	task_operation_is_unpublished () const
	Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...

virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

static std::string	keyname ()

Private Attributes
bool	allow_even_trades_
	Allow residues that satisfy an unsat and create a new unsatisfiable one. More...

core::Real	atomic_depth_probe_radius_

core::Real	atomic_depth_resolution_

core::Real	atomic_depth_cutoff_

core::Real	minimum_hbond_energy_

core::scoring::ScoreFunctionOP	scorefxn_sc_

core::scoring::ScoreFunctionOP	scorefxn_bb_

Additional Inherited Members
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

typedef pose::Pose	Pose

Constructor & Destructor Documentation

protocols::task_operations::PruneBuriedUnsatsOperation::PruneBuriedUnsatsOperation ( )

default constructor

References core::scoring::hbond_bb_sc, core::scoring::hbond_lr_bb, core::scoring::methods::EnergyMethodOptions::hbond_options(), core::scoring::hbond_sc, core::scoring::hbond_sr_bb, scorefxn_bb_, scorefxn_sc_, and core::scoring::hbonds::HBondOptions::use_hb_env_dep().

protocols::task_operations::PruneBuriedUnsatsOperation::PruneBuriedUnsatsOperation ( PruneBuriedUnsatsOperation const & other )

copy constructor

default constructor

protocols::task_operations::PruneBuriedUnsatsOperation::~PruneBuriedUnsatsOperation ( )

overridedefault

destructor

Member Function Documentation

bool protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades ( ) const

inline

References allow_even_trades_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades ( bool allow_even_trades )

inline

References allow_even_trades(), and allow_even_trades_.

Referenced by allow_even_trades().

void protocols::task_operations::PruneBuriedUnsatsOperation::apply	(	core::pose::Pose const &	pose,
		core::pack::task::PackerTask &	task
	)		const

overridevirtual

apply

Implements core::pack::task::operation::TaskOperation.

References allow_even_trades_, core::pack::task::PackerTask::append_rotamersets_operation(), atomic_depth_cutoff_, atomic_depth_probe_radius_, atomic_depth_resolution_, core::pose::symmetry::is_symmetric(), minimum_hbond_energy_, scorefxn_bb_, and scorefxn_sc_.

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff ( ) const

inline

References atomic_depth_cutoff_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff ( core::Real atomic_depth_cutoff )

inline

References atomic_depth_cutoff(), and atomic_depth_cutoff_.

Referenced by atomic_depth_cutoff().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius ( ) const

inline

References atomic_depth_probe_radius_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius ( core::Real atomic_depth_probe_radius )

inline

References atomic_depth_probe_radius(), and atomic_depth_probe_radius_.

Referenced by atomic_depth_probe_radius().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution ( ) const

inline

References atomic_depth_resolution_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution ( core::Real atomic_depth_resolution )

inline

References atomic_depth_resolution(), and atomic_depth_resolution_.

Referenced by atomic_depth_resolution().

core::pack::task::operation::TaskOperationOP protocols::task_operations::PruneBuriedUnsatsOperation::clone ( ) const

overridevirtual

make clone

clone

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::PruneBuriedUnsatsOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::PruneBuriedUnsatsOperationCreator::keyname(), and provide_xml_schema().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy ( ) const

inline

References minimum_hbond_energy_.

Referenced by parse_tag().

void protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy ( core::Real minimum_hbond_energy )

inline

References minimum_hbond_energy(), and minimum_hbond_energy_.

Referenced by minimum_hbond_energy().

PruneBuriedUnsatsOperation & protocols::task_operations::PruneBuriedUnsatsOperation::operator= ( PruneBuriedUnsatsOperation const & other )

References allow_even_trades_, atomic_depth_cutoff_, atomic_depth_probe_radius_, atomic_depth_resolution_, minimum_hbond_energy_, scorefxn_bb_, and scorefxn_sc_.

void protocols::task_operations::PruneBuriedUnsatsOperation::parse_tag	(	TagCOP	tag,
		DataMap &
	)

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References allow_even_trades(), atomic_depth_cutoff(), atomic_depth_probe_radius(), atomic_depth_resolution(), and minimum_hbond_energy().

void protocols::task_operations::PruneBuriedUnsatsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::PruneBuriedUnsatsOperationCreator::provide_xml_schema().

Member Data Documentation

bool protocols::task_operations::PruneBuriedUnsatsOperation::allow_even_trades_

private

Allow residues that satisfy an unsat and create a new unsatisfiable one.

Referenced by allow_even_trades(), apply(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_cutoff_

private

Referenced by apply(), atomic_depth_cutoff(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_probe_radius_

private

Referenced by apply(), atomic_depth_probe_radius(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::atomic_depth_resolution_

private

Referenced by apply(), atomic_depth_resolution(), and operator=().

core::Real protocols::task_operations::PruneBuriedUnsatsOperation::minimum_hbond_energy_

private

Referenced by apply(), minimum_hbond_energy(), and operator=().

core::scoring::ScoreFunctionOP protocols::task_operations::PruneBuriedUnsatsOperation::scorefxn_bb_

private

Referenced by apply(), operator=(), and PruneBuriedUnsatsOperation().

core::scoring::ScoreFunctionOP protocols::task_operations::PruneBuriedUnsatsOperation::scorefxn_sc_

private

Referenced by apply(), operator=(), and PruneBuriedUnsatsOperation().

The documentation for this class was generated from the following files:

src/protocols/task_operations/PruneBuriedUnsatsOperation.hh
src/protocols/task_operations/PruneBuriedUnsatsOperation.cc

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation