Rosetta
core::scoring::Ramachandran2B Member List

This is the complete list of members for core::scoring::Ramachandran2B, including all inherited members.

AA typedefcore::scoring::Ramachandran2B
binw_core::scoring::Ramachandran2Bprivatestatic
draw_random_phi_psi_from_cdf(utility::vector1< Real > const &cdf, Real &phi, Real &psi) constcore::scoring::Ramachandran2Bprivate
eval_rama_score_all(Pose &pose, ScoreFunction const &scorefxn) constcore::scoring::Ramachandran2B
eval_rama_score_residue(AA const res_aa, Real const phi, Real const psi) constcore::scoring::Ramachandran2B
eval_rama_score_residue(conformation::Residue const &res, chemical::AA const left_aa, chemical::AA const right_aa, Real &rama, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
eval_rama_score_residue(Real phi, Real psi, chemical::AA const res, chemical::AA const left_aa, chemical::AA const right_aa) constcore::scoring::Ramachandran2B
eval_rama_score_residue(Real phi, Real psi, chemical::AA const res, chemical::AA const left_aa, chemical::AA const right_aa, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
eval_rama_score_residue(conformation::Residue const &res, Real &rama, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
eval_rama_score_residue(AA const res_aa, Real const phi, Real const psi, Real &rama, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
get_entries_per_torsion_bin_left(AA const left_aa, AA const pos_aa, std::map< conformation::ppo_torsion_bin, core::Size > &tb_frequencies) constcore::scoring::Ramachandran2B
get_entries_per_torsion_bin_right(AA const pos_aa, AA const right_aa, std::map< conformation::ppo_torsion_bin, core::Size > &tb_frequencies) constcore::scoring::Ramachandran2B
IdealizeRamaEnergy(Real const phi, Real const psi, Real &rama, Real &drama_dphi, Real &drama_dpsi, Real const entropy, ObjexxFCL::FArray2A< Real > const &rama_for_res) constcore::scoring::Ramachandran2B
init_rama_sampling_table(const conformation::ppo_torsion_bin torsion_bin, ObjexxFCL::FArray4D< Real > const &ram_probability, ObjexxFCL::FArray2D< utility::vector1< Real > > &cdf, ObjexxFCL::FArray3D< utility::vector1< Real > > &cdf_by_torsion_bin, ObjexxFCL::FArray3D< Size > &n_valid_pp_bins_by_ppo_torbin) constcore::scoring::Ramachandran2Bprivate
initialize_rama_sampling_tables()core::scoring::Ramachandran2Bprivate
left_cdf(core::chemical::AA aa_left, core::chemical::AA aa_center) constcore::scoring::Ramachandran2B
left_cdf_core::scoring::Ramachandran2Bprivate
left_cdf_by_torsion_bin_core::scoring::Ramachandran2Bprivate
left_cdf_for_torsion_bin(chemical::AA aa_left, chemical::AA aa_center, conformation::ppo_torsion_bin) constcore::scoring::Ramachandran2B
left_ram_probabil_core::scoring::Ramachandran2Bprivate
minimum_sampling_probability() constcore::scoring::Ramachandran2B
n_aa_core::scoring::Ramachandran2Bprivatestatic
n_phi_core::scoring::Ramachandran2Bprivatestatic
n_phi_bins() constcore::scoring::Ramachandran2B
n_psi_core::scoring::Ramachandran2Bprivatestatic
n_psi_bins() constcore::scoring::Ramachandran2B
n_valid_left_pp_bins_by_ppo_torbin_core::scoring::Ramachandran2Bprivate
n_valid_right_pp_bins_by_ppo_torbin_core::scoring::Ramachandran2Bprivate
nullaacore::scoring::Ramachandran2Bprivatestatic
Pose typedefcore::scoring::Ramachandran2B
ram_energ_core::scoring::Ramachandran2Bprivate
ram_energ_left_core::scoring::Ramachandran2Bprivate
ram_energ_right_core::scoring::Ramachandran2Bprivate
ram_entropy_core::scoring::Ramachandran2Bprivate
ram_entropy_left_core::scoring::Ramachandran2Bprivate
ram_entropy_right_core::scoring::Ramachandran2Bprivate
rama_bin_probability_left(core::chemical::AA aa_left, core::chemical::AA aa_center, Real phi, Real psi) constcore::scoring::Ramachandran2B
rama_bin_probability_right(core::chemical::AA aa_center, core::chemical::AA aa_right, Real phi, Real psi) constcore::scoring::Ramachandran2B
rama_sampling_thold_core::scoring::Ramachandran2Bprivatestatic
rama_score_limit_core::scoring::Ramachandran2Bprivate
Ramachandran2B()core::scoring::Ramachandran2B
RamaE(conformation::Residue const &rsd) constcore::scoring::Ramachandran2B
RamaE(conformation::Residue const &rsd, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
RamaE(Real phi, Real psi, chemical::AA const &rsd, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
RamaE_Lower(conformation::Residue const &rsd, chemical::AA const &neighbor) constcore::scoring::Ramachandran2B
RamaE_Lower(conformation::Residue const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
RamaE_Lower(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor) constcore::scoring::Ramachandran2B
RamaE_Lower(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
RamaE_Upper(conformation::Residue const &rsd, chemical::AA const &neighbor) constcore::scoring::Ramachandran2B
RamaE_Upper(conformation::Residue const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
RamaE_Upper(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor) constcore::scoring::Ramachandran2B
RamaE_Upper(Real phi, Real psi, chemical::AA const &rsd, chemical::AA const &neighbor, Real &drama_dphi, Real &drama_dpsi) constcore::scoring::Ramachandran2B
random_phipsi_from_rama_by_torsion_bin_left(AA const left_aa, AA const pos_aa, Real &phi, Real &psi, conformation::ppo_torsion_bin const torsion_bin) constcore::scoring::Ramachandran2B
random_phipsi_from_rama_by_torsion_bin_right(AA const pos_aa, AA const right_aa, Real &phi, Real &psi, conformation::ppo_torsion_bin const torsion_bin) constcore::scoring::Ramachandran2B
random_phipsi_from_rama_left(AA const left_aa, AA const pos_aa, Real &phi, Real &psi) constcore::scoring::Ramachandran2B
random_phipsi_from_rama_right(AA const pos_aa, AA const right_aa, Real &phi, Real &psi) constcore::scoring::Ramachandran2B
read_rama()core::scoring::Ramachandran2Bprivate
right_cdf(core::chemical::AA aa_center, core::chemical::AA aa_right) constcore::scoring::Ramachandran2B
right_cdf_core::scoring::Ramachandran2Bprivate
right_cdf_by_torsion_bin_core::scoring::Ramachandran2Bprivate
right_cdf_for_torsion_bin(chemical::AA aa_center, chemical::AA aa_right, conformation::ppo_torsion_bin) constcore::scoring::Ramachandran2B
right_ram_probabil_core::scoring::Ramachandran2Bprivate
write_rama_score_all(Pose const &pose) constcore::scoring::Ramachandran2B
~Ramachandran2B() overridecore::scoring::Ramachandran2B