Rosetta: protocols::simple_filters::NetChargeFilter Class Reference

Rosetta

#include <NetChargeFilter.hh>

Inheritance diagram for protocols::simple_filters::NetChargeFilter:

Inheritance graph

[legend]

Public Member Functions
	NetChargeFilter ()

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

core::pack::task::TaskFactoryOP	task_factory () const

void	task_factory (core::pack::task::TaskFactoryOP tf)

	~NetChargeFilter () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Size	chain_

signed int	net_charge_max_

signed int	net_charge_min_

core::pack::task::TaskFactoryOP	task_factory_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

◆ NetChargeFilter()

protocols::simple_filters::NetChargeFilter::NetChargeFilter ( )

◆ ~NetChargeFilter()

protocols::simple_filters::NetChargeFilter::~NetChargeFilter ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::simple_filters::NetChargeFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), net_charge_max_, net_charge_min_, and protocols::simple_filters::TR().

◆ class_name()

std::string protocols::simple_filters::NetChargeFilter::class_name ( )

static

Referenced by protocols::simple_filters::NetChargeFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

filters::FilterOP protocols::simple_filters::NetChargeFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ compute()

core::Real protocols::simple_filters::NetChargeFilter::compute ( core::pose::Pose const & pose ) const

References core::pose::Pose::aa(), core::conformation::Residue::chain(), chain_, core::pose::Pose::clear(), core::conformation::membrane::out, core::pose::Pose::residue(), protocols::rosetta_scripts::residue_packer_states(), core::pose::Pose::size(), task_factory(), and protocols::simple_filters::TR().

Referenced by apply(), report(), and report_sm().

◆ fresh_instance()

filters::FilterOP protocols::simple_filters::NetChargeFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

◆ name()

std::string protocols::simple_filters::NetChargeFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::simple_filters::NetChargeFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References chain_, net_charge_max_, net_charge_min_, core::pack::task::parse_task_operations(), task_factory(), and protocols::simple_filters::TR().

◆ provide_xml_schema()

void protocols::simple_filters::NetChargeFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::NetChargeFilterCreator::provide_xml_schema().

◆ report()

void protocols::simple_filters::NetChargeFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

◆ report_sm()

core::Real protocols::simple_filters::NetChargeFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

◆ task_factory() [1/2]

core::pack::task::TaskFactoryOP protocols::simple_filters::NetChargeFilter::task_factory ( ) const

References task_factory_.

Referenced by compute(), and parse_my_tag().

◆ task_factory() [2/2]

void protocols::simple_filters::NetChargeFilter::task_factory ( core::pack::task::TaskFactoryOP tf )

References task_factory_.

Member Data Documentation

◆ chain_

core::Size protocols::simple_filters::NetChargeFilter::chain_

private

Referenced by compute(), and parse_my_tag().

◆ net_charge_max_

signed int protocols::simple_filters::NetChargeFilter::net_charge_max_

private

Referenced by apply(), and parse_my_tag().

◆ net_charge_min_

signed int protocols::simple_filters::NetChargeFilter::net_charge_min_

private

Referenced by apply(), and parse_my_tag().

◆ task_factory_

core::pack::task::TaskFactoryOP protocols::simple_filters::NetChargeFilter::task_factory_

private

Referenced by task_factory().

The documentation for this class was generated from the following files:

src/protocols/simple_filters/NetChargeFilter.hh
src/protocols/simple_filters/NetChargeFilter.cc