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Public Types | Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::denovo_design::task_operations::ConsensusLoopDatabase Class Reference

#include <ConsensusLoopDesignOperation.hh>

Inheritance diagram for protocols::denovo_design::task_operations::ConsensusLoopDatabase:
Inheritance graph
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Public Types

typedef std::string Abego
 
typedef std::map< Abego, LoopAAsAbegoToLoopAAsMap
 
typedef std::map< SurroundingSS, AbegoToLoopAAsMapSurroundingSSMap
 

Public Member Functions

 ConsensusLoopDatabase ()
 
virtual ~ConsensusLoopDatabase ()
 
void set_frequency (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid, char const aa, AAFrequencyCOP const frequency)
 
AAFrequencies const & frequencies (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid) const
 
AAFrequency const & frequency (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid, char const aa) const
 
bool has_frequencies (SurroundingSS const &surrounding_ss, Abego const &abego) const
 
bool has_frequencies (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid) const
 
bool has_frequency (SurroundingSS const &surrounding_ss, Abego const &abego, core::Size const loop_resid, char const aa) const
 

Private Member Functions

void read_db ()
 

Private Attributes

SurroundingSSMap ss_map_
 

Member Typedef Documentation

◆ Abego

◆ AbegoToLoopAAsMap

◆ SurroundingSSMap

Constructor & Destructor Documentation

◆ ConsensusLoopDatabase()

protocols::denovo_design::task_operations::ConsensusLoopDatabase::ConsensusLoopDatabase ( )

References read_db().

◆ ~ConsensusLoopDatabase()

protocols::denovo_design::task_operations::ConsensusLoopDatabase::~ConsensusLoopDatabase ( )
virtualdefault

Member Function Documentation

◆ frequencies()

AAFrequencies const & protocols::denovo_design::task_operations::ConsensusLoopDatabase::frequencies ( SurroundingSS const &  surrounding_ss,
Abego const &  abego,
core::Size const  loop_resid 
) const

◆ frequency()

AAFrequency const & protocols::denovo_design::task_operations::ConsensusLoopDatabase::frequency ( SurroundingSS const &  surrounding_ss,
Abego const &  abego,
core::Size const  loop_resid,
char const  aa 
) const

◆ has_frequencies() [1/2]

bool protocols::denovo_design::task_operations::ConsensusLoopDatabase::has_frequencies ( SurroundingSS const &  surrounding_ss,
Abego const &  abego 
) const

References ss_map_.

Referenced by has_frequency().

◆ has_frequencies() [2/2]

bool protocols::denovo_design::task_operations::ConsensusLoopDatabase::has_frequencies ( SurroundingSS const &  surrounding_ss,
Abego const &  abego,
core::Size const  loop_resid 
) const

References ss_map_.

◆ has_frequency()

bool protocols::denovo_design::task_operations::ConsensusLoopDatabase::has_frequency ( SurroundingSS const &  surrounding_ss,
Abego const &  abego,
core::Size const  loop_resid,
char const  aa 
) const

◆ read_db()

void protocols::denovo_design::task_operations::ConsensusLoopDatabase::read_db ( )
private

◆ set_frequency()

void protocols::denovo_design::task_operations::ConsensusLoopDatabase::set_frequency ( SurroundingSS const &  surrounding_ss,
Abego const &  abego,
core::Size const  loop_resid,
char const  aa,
AAFrequencyCOP const  frequency 
)

Member Data Documentation

◆ ss_map_

SurroundingSSMap protocols::denovo_design::task_operations::ConsensusLoopDatabase::ss_map_
private

The documentation for this class was generated from the following files: