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protocols::comparative_modeling::Align_RmsdEvaluator Class Reference

#include <Align_RmsdEvaluator.hh>

Inheritance diagram for protocols::comparative_modeling::Align_RmsdEvaluator:
Inheritance graph

Public Member Functions

 Align_RmsdEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool calc_gdt=true, core::sequence::SequenceAlignmentOP aln=nullptr, bool gdt_by_TM=false)
 ~Align_RmsdEvaluator () override
void apply (core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &ss) const override
 evaluate pose and store values in Silent_Struct More...
core::Real apply (core::pose::Pose &) const override
 evaluate pose More...
void report_gdt_components (bool const setting)
bool report_gdt_components () const
void calc_gdt (bool const setting)
bool calc_gdt () const
void gdt_by_TM (bool const setting)
bool gdt_by_TM () const
- Public Member Functions inherited from protocols::evaluation::AlignEvaluator
 AlignEvaluator (core::pose::PoseCOP native_pose, std::string tag="", bool report_aln_components=true, core::sequence::SequenceAlignmentOP aln=nullptr)
 ~AlignEvaluator () override
core::Real apply (core::pose::Pose &) const override
 outdated method - don't use! More...
core::sequence::SequenceAlignmentOP get_alignment (core::pose::Pose const &pose) const
void report_aln_components (bool const setting)
bool report_aln_components () const
std::string tag () const
core::pose::PoseCOP native_pose () const
- Public Member Functions inherited from protocols::evaluation::SingleValuePoseEvaluator< core::Real >
 SingleValuePoseEvaluator (std::string const &name="UNSPECIFIED_SingleValuePoseEvaluator")
void apply (core::pose::Pose &, std::string tag, core::io::silent::SilentStruct &pss) const override
 evaluate pose and store values in Silent_Struct why is this specific to a specific type of SilentStruct? that seems needlessly pointless and overly constraining. More...
bool applicable (core::pose::Pose const &) const override
core::Size size () const override
std::string name (core::Size) const override
- Public Member Functions inherited from protocols::evaluation::PoseEvaluator
 PoseEvaluator ()
 ~PoseEvaluator () override=default
virtual void apply (core::io::silent::SilentStruct &pss) const
 direct application to SilentStruct... default implementation makes pose and calls "apply", you can overload if you don't need the pose-step More...

Private Attributes

bool calc_gdt_
bool gdt_by_TM_
bool report_gdt_components_

Constructor & Destructor Documentation

protocols::comparative_modeling::Align_RmsdEvaluator::Align_RmsdEvaluator ( core::pose::PoseCOP  native_pose,
std::string  tag = "",
bool  calc_gdt = true,
core::sequence::SequenceAlignmentOP  aln = nullptr,
bool  gdt_by_TM = false 
protocols::comparative_modeling::Align_RmsdEvaluator::~Align_RmsdEvaluator ( )

Member Function Documentation

void protocols::comparative_modeling::Align_RmsdEvaluator::apply ( core::pose::Pose ,
std::string  tag,
core::io::silent::SilentStruct pss 
) const
core::Real protocols::comparative_modeling::Align_RmsdEvaluator::apply ( core::pose::Pose ) const
void protocols::comparative_modeling::Align_RmsdEvaluator::calc_gdt ( bool const  setting)

References calc_gdt_.

bool protocols::comparative_modeling::Align_RmsdEvaluator::calc_gdt ( ) const

References calc_gdt_.

Referenced by apply(), and report_gdt_components().

void protocols::comparative_modeling::Align_RmsdEvaluator::gdt_by_TM ( bool const  setting)

References gdt_by_TM_.

bool protocols::comparative_modeling::Align_RmsdEvaluator::gdt_by_TM ( ) const

References gdt_by_TM_.

Referenced by apply().

void protocols::comparative_modeling::Align_RmsdEvaluator::report_gdt_components ( bool const  setting)
bool protocols::comparative_modeling::Align_RmsdEvaluator::report_gdt_components ( ) const

References report_gdt_components_.

Referenced by apply().

Member Data Documentation

bool protocols::comparative_modeling::Align_RmsdEvaluator::calc_gdt_

Referenced by calc_gdt().

bool protocols::comparative_modeling::Align_RmsdEvaluator::gdt_by_TM_

Referenced by gdt_by_TM().

bool protocols::comparative_modeling::Align_RmsdEvaluator::report_gdt_components_

Referenced by report_gdt_components().

The documentation for this class was generated from the following files: