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protocols::frag_picker::scores::SecondarySimilarity Member List

This is the complete list of members for protocols::frag_picker::scores::SecondarySimilarity, including all inherited members.

cache_protocols::frag_picker::scores::SecondarySimilarityprotected
cached_score(FragmentCandidateOP f, FragmentScoreMapOP empty_map) overrideprotocols::frag_picker::scores::SecondarySimilarityvirtual
cached_scores_id_protocols::frag_picker::scores::SecondarySimilarityprivate
CachingScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::CachingScoringMethodinline
clean_up() overrideprotocols::frag_picker::scores::SecondarySimilarityinlinevirtual
do_caching(VallChunkOP) overrideprotocols::frag_picker::scores::SecondarySimilarityvirtual
do_caching_simple(VallChunkOP)protocols::frag_picker::scores::SecondarySimilarity
FragmentScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)protocols::frag_picker::scores::FragmentScoringMethodinline
get_id()protocols::frag_picker::scores::FragmentScoringMethodinline
get_min_allowed_score()protocols::frag_picker::scores::FragmentScoringMethodinline
get_prediction_name()protocols::frag_picker::scores::SecondarySimilarityinline
get_priority()protocols::frag_picker::scores::FragmentScoringMethodinline
get_score_name()protocols::frag_picker::scores::FragmentScoringMethodinline
get_secondary_prediction()protocols::frag_picker::scores::SecondarySimilarityinline
get_use_lowest()protocols::frag_picker::scores::FragmentScoringMethodinline
id_protocols::frag_picker::scores::FragmentScoringMethodprotected
lowest_acceptable_value_protocols::frag_picker::scores::FragmentScoringMethodprotected
name_protocols::frag_picker::scores::FragmentScoringMethodprotected
prediction_name_protocols::frag_picker::scores::SecondarySimilarityprivate
priority_protocols::frag_picker::scores::FragmentScoringMethodprotected
query_len_protocols::frag_picker::scores::SecondarySimilarityprivate
query_ss_protocols::frag_picker::scores::SecondarySimilarityprivate
raw_probs_protocols::frag_picker::scores::SecondarySimilarityprivate
score(FragmentCandidateOP, FragmentScoreMapOP) overrideprotocols::frag_picker::scores::SecondarySimilarityvirtual
scores_protocols::frag_picker::scores::SecondarySimilarityprotected
SecondarySimilarity(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, core::fragment::SecondaryStructureOP query_prediction, std::string const &prediction_name, core::Size sequence_length, utility::vector1< core::Size > &frag_sizes, core::Size longest_vall_chunk)protocols::frag_picker::scores::SecondarySimilarity
set_id(core::Size id)protocols::frag_picker::scores::FragmentScoringMethodinline
set_min_allowed_score(core::Real lowest_acceptable_value)protocols::frag_picker::scores::FragmentScoringMethodinline
use_lowest_protocols::frag_picker::scores::FragmentScoringMethodprotected
~SecondarySimilarity() overrideprotocols::frag_picker::scores::SecondarySimilarityinline