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protocols::fldsgn::MatchResidues Class Reference

#include <MatchResidues.hh>

Inheritance diagram for protocols::fldsgn::MatchResidues:
Inheritance graph
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Public Types

typedef protocols::moves::Mover Mover
 
typedef protocols::moves::MoverOP MoverOP
 
typedef core::Real Real
 
typedef core::Size Size
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef utility::vector1
< core::Size
VecSize
 
typedef utility::vector1< VecSizeVecVecSize
 

Public Member Functions

 MatchResidues ()
 
virtual ~MatchResidues ()
 
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &)
 parse xml More...
 
core::Real compute (core::pose::Pose const &pose, VecSize &best_fit) const
 
core::Real compute_comb (core::pose::Pose const &pose, VecSize const &comb) const
 
core::Real superimpose_comb (core::pose::Pose &pose, VecSize const &comb) const
 
core::Real threshold () const
 
void threshold (core::Real value)
 

Static Public Member Functions

static void provide_attributes_and_subelements (utility::tag::AttributeList &attlist, utility::tag::XMLSchemaSimpleSubelementList &ssl)
 

Private Member Functions

std::map< std::string,
boost::tuple< core::Size,
core::Size > > 
map_ss_segments (std::string const &ss) const
 
void cart_product (VecVecSize &rvvi, VecSize &rvi, VecVecSize::const_iterator me, VecVecSize::const_iterator end) const
 
VecVecSize cart_product (VecVecSize const &input) const
 

Private Attributes

core::pose::Pose reference_pose_
 
VecSize reference_residues_indexes_
 
VecVecSize mod_segment_prod_
 
core::Real threshold_
 

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::fldsgn::MatchResidues::DataMap
typedef utility::tag::TagCOP protocols::fldsgn::MatchResidues::TagCOP

Constructor & Destructor Documentation

protocols::fldsgn::MatchResidues::MatchResidues ( )
default
protocols::fldsgn::MatchResidues::~MatchResidues ( )
virtualdefault

Member Function Documentation

void protocols::fldsgn::MatchResidues::cart_product ( VecVecSize rvvi,
VecSize rvi,
VecVecSize::const_iterator  me,
VecVecSize::const_iterator  end 
) const
private

References core::sequence::end.

Referenced by cart_product(), and parse_my_tag().

VecVecSize protocols::fldsgn::MatchResidues::cart_product ( VecVecSize const &  input) const
private

References cart_product().

core::Real protocols::fldsgn::MatchResidues::compute ( core::pose::Pose const &  pose,
VecSize best_fit 
) const
core::Real protocols::fldsgn::MatchResidues::compute_comb ( core::pose::Pose const &  pose,
VecSize const &  comb 
) const
std::map< std::string, boost::tuple< core::Size, core::Size > > protocols::fldsgn::MatchResidues::map_ss_segments ( std::string const &  ss) const
private
void protocols::fldsgn::MatchResidues::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &   
)
void protocols::fldsgn::MatchResidues::provide_attributes_and_subelements ( utility::tag::AttributeList &  attlist,
utility::tag::XMLSchemaSimpleSubelementList &  ssl 
)
static
core::Real protocols::fldsgn::MatchResidues::superimpose_comb ( core::pose::Pose pose,
VecSize const &  comb 
) const
core::Real protocols::fldsgn::MatchResidues::threshold ( ) const
inline
void protocols::fldsgn::MatchResidues::threshold ( core::Real  value)
inline

References threshold_.

Member Data Documentation

VecVecSize protocols::fldsgn::MatchResidues::mod_segment_prod_
private

Referenced by compute(), and parse_my_tag().

core::pose::Pose protocols::fldsgn::MatchResidues::reference_pose_
private
VecSize protocols::fldsgn::MatchResidues::reference_residues_indexes_
private
core::Real protocols::fldsgn::MatchResidues::threshold_
private

Referenced by parse_my_tag(), and threshold().


The documentation for this class was generated from the following files: