protocols::task_operations::RestrictNativeResiduesOperation Class Reference

#include <RestrictNativeResiduesOperation.hh>

Inheritance diagram for protocols::task_operations::RestrictNativeResiduesOperation:

Public Types
typedef std::string	String
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
typedef utility::tag::TagCOP	TagCOP
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	RestrictNativeResiduesOperation ()
	default constructor More...
	~RestrictNativeResiduesOperation () override
	destructor More...
TaskOperationOP	clone () const override
	make clone More...
void	parse_tag (TagCOP tag, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
void	apply (Pose const &pose, PackerTask &task) const override
	apply More...
core::pose::PoseCOP	reference_pose () const
void	reference_pose (core::pose::PoseCOP reference_pose)
void	reference_pose (core::pose::Pose const &pose)
bool	verbose () const
void	verbose (bool const verb)
bool	prevent_repacking () const
void	prevent_repacking (bool const prev)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
core::pose::PoseCOP	reference_pose_
bool	verbose_
bool	prevent_repacking_
bool	invert_

Member Typedef Documentation

PackerTask

typedef core::pack::task::PackerTask protocols::task_operations::RestrictNativeResiduesOperation::PackerTask

parent

typedef TaskOperation protocols::task_operations::RestrictNativeResiduesOperation::parent

Pose

typedef core::pose::Pose protocols::task_operations::RestrictNativeResiduesOperation::Pose

Real

typedef core::Real protocols::task_operations::RestrictNativeResiduesOperation::Real

String

typedef std::string protocols::task_operations::RestrictNativeResiduesOperation::String

TagCOP

typedef utility::tag::TagCOP protocols::task_operations::RestrictNativeResiduesOperation::TagCOP

TaskOperation

typedef core::pack::task::operation::TaskOperation protocols::task_operations::RestrictNativeResiduesOperation::TaskOperation

TaskOperationOP

typedef core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictNativeResiduesOperation::TaskOperationOP

Constructor & Destructor Documentation

RestrictNativeResiduesOperation()

protocols::task_operations::RestrictNativeResiduesOperation::RestrictNativeResiduesOperation

(

)

default constructor

~RestrictNativeResiduesOperation()

protocols::task_operations::RestrictNativeResiduesOperation::~RestrictNativeResiduesOperation ( )

overridedefault

destructor

Member Function Documentation

apply()

void protocols::task_operations::RestrictNativeResiduesOperation::apply ( Pose const &  pose, PackerTask &  task  ) const

overridevirtual

apply

Loop over the residues in the current pose and restrict those that match the reference pose (ie, native residues) to repacking.

Implements core::pack::task::operation::TaskOperation.

References core::pose::Pose::conformation(), core::conformation::Conformation::delete_residue_slow(), core::pose::symmetry::extract_asymmetric_unit(), invert_, core::pose::symmetry::is_symmetric(), core::chemical::ResidueTypeBase::name(), core::conformation::Residue::name3(), core::pack::task::PackerTask::nonconst_residue_task(), core::pose::Pose::pdb_info(), core::pack::task::ResidueLevelTask::prevent_repacking(), prevent_repacking_, reference_pose(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), core::pack::task::ResidueLevelTask::restrict_to_repacking(), core::pose::Pose::size(), protocols::task_operations::TR(), and verbose_.

clone()

core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictNativeResiduesOperation::clone ( ) const

overridevirtual

make clone

clone

Implements core::pack::task::operation::TaskOperation.

keyname()

static std::string protocols::task_operations::RestrictNativeResiduesOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::RestrictNativeResiduesOperationCreator::keyname(), and provide_xml_schema().

parse_tag()

void protocols::task_operations::RestrictNativeResiduesOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References invert_, core::import_pose::PDB_file, core::import_pose::pose_from_file(), prevent_repacking(), reference_pose(), protocols::task_operations::TR(), and verbose().

prevent_repacking() [1/2]

bool protocols::task_operations::RestrictNativeResiduesOperation::prevent_repacking

(

)

const

References prevent_repacking_.

Referenced by parse_tag().

prevent_repacking() [2/2]

void protocols::task_operations::RestrictNativeResiduesOperation::prevent_repacking

(

bool const

prev

)

References prevent_repacking_.

provide_xml_schema()

void protocols::task_operations::RestrictNativeResiduesOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::RestrictNativeResiduesOperationCreator::provide_xml_schema().

reference_pose() [1/3]

core::pose::PoseCOP protocols::task_operations::RestrictNativeResiduesOperation::reference_pose

(

)

const

References reference_pose_.

Referenced by apply(), and parse_tag().

reference_pose() [2/3]

void protocols::task_operations::RestrictNativeResiduesOperation::reference_pose

(

core::pose::Pose const &

pose

)

References reference_pose_.

reference_pose() [3/3]

void protocols::task_operations::RestrictNativeResiduesOperation::reference_pose

(

core::pose::PoseCOP

reference_pose

)

References reference_pose_.

verbose() [1/2]

bool protocols::task_operations::RestrictNativeResiduesOperation::verbose

(

)

const

References verbose_.

Referenced by parse_tag().

verbose() [2/2]

void protocols::task_operations::RestrictNativeResiduesOperation::verbose

(

bool const

verb

)

References verbose_.

Member Data Documentation

invert_

bool protocols::task_operations::RestrictNativeResiduesOperation::invert_

private

Referenced by apply(), and parse_tag().

prevent_repacking_

bool protocols::task_operations::RestrictNativeResiduesOperation::prevent_repacking_

private

Referenced by apply(), and prevent_repacking().

reference_pose_

core::pose::PoseCOP protocols::task_operations::RestrictNativeResiduesOperation::reference_pose_

private

Referenced by reference_pose().

verbose_

bool protocols::task_operations::RestrictNativeResiduesOperation::verbose_

private

Referenced by apply(), and verbose().

---

The documentation for this class was generated from the following files:

• src/protocols/task_operations/RestrictNativeResiduesOperation.hh
• src/protocols/task_operations/RestrictNativeResiduesOperation.cc