Rosetta  2020.37
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protocols::loops::Loops Member List

This is the complete list of members for protocols::loops::Loops, including all inherited members.

add_loop(Loop loop, core::Size minimal_gap=0)protocols::loops::Loops
add_loop(core::Size const start, core::Size const stop, core::Size const cut=0, core::Real skip_rate=0.0, bool const extended=false)protocols::loops::Loops
add_loop(const const_iterator &it)protocols::loops::Loops
add_loop(const iterator &it)protocols::loops::Loops
add_overlap_loop(Loops loops)protocols::loops::Loops
add_overlap_loop(const Loop &loop)protocols::loops::Loops
auto_choose_cutpoints(core::pose::Pose const &pose)protocols::loops::Loops
begin() const protocols::loops::Loops
center_of_mass(const core::pose::Pose &pose, numeric::xyzVector< core::Real > *center) const protocols::loops::Loops
choose_cutpoints(core::pose::Pose const &pose)protocols::loops::Loops
clear()protocols::loops::Loops
clone() const protocols::loops::Loops
const_iterator typedefprotocols::loops::Loops
delete_loop(core::Size const start, core::Size const stop)protocols::loops::Loops
empty() const protocols::loops::Loops
end() const protocols::loops::Loops
file_reading_token()protocols::loops::Loops
file_reading_token_protocols::loops::Loopsprivate
get_loop_file_reader()protocols::loops::Loopsstatic
get_residues(utility::vector1< core::Size > &selection) const protocols::loops::Loops
grow_all_loops(core::Size nres, core::Real magnitude)protocols::loops::Loops
grow_all_loops(core::pose::Pose const &pose, core::Real magnitude)protocols::loops::Loops
grow_loop(core::pose::Pose const &pose, Loop &loop, core::Real magnitude)protocols::loops::Loops
grow_loop(core::Size nres, Loop &loop, core::Real magnitude)protocols::loops::Loops
grow_loop(core::Size nres, Loop &loop, core::Real mag_left, core::Real mag_right)protocols::loops::Loops
grow_loop_away_from_sheets(core::pose::Pose const &pose, Loop &loop, core::Real magnitude)protocols::loops::Loops
has(core::Size const seqpos, int const offset=0) const protocols::loops::Loops
init(LoopList const &loops_in, bool const read_loop_file_from_options=false, std::string const &passed_in_filename="")protocols::loops::Loopsprivate
invert(core::Size num_residues) const protocols::loops::Loops
is_loop_residue(core::Size const seqpos, int const offset=0) const protocols::loops::Loops
iterator typedefprotocols::loops::Loops
loop_file_name()protocols::loops::Loops
loop_filename_protocols::loops::Loopsprivate
loop_index_of_residue(core::Size const seqpos) const protocols::loops::Loops
loop_of_residue(core::Size const seqpos, Loop &loop) const protocols::loops::Loops
loop_size(core::Size const loop_num) const protocols::loops::Loops
loop_size() const protocols::loops::Loops
LoopList typedefprotocols::loops::Loops
loops() const protocols::loops::Loops
Loops()protocols::loops::Loops
Loops(const Loops &src)protocols::loops::Loops
Loops(SerializedLoopList const &src)protocols::loops::Loops
Loops(std::string const &loop_file_name)protocols::loops::Loops
Loops(bool setup_loops_from_options_system)protocols::loops::Loops
Loops(utility::vector1< bool > const &selection, bool randomize_cutpoint=true)protocols::loops::Loops
loops_protocols::loops::Loopsprivate
make_sequence_shift(int shift)protocols::loops::Loops
nr_residues() const protocols::loops::Loops
num_loop() const protocols::loops::Loops
one_random_loop() const protocols::loops::Loops
operator!=(Loops const &other) const protocols::loops::Loops
operator<<(std::ostream &os, const Loops &loops)protocols::loops::Loopsfriend
operator=(Loops const &src)protocols::loops::Loops
operator==(Loops const &other) const protocols::loops::Loops
operator[](core::Size const i) const protocols::loops::Loops
operator[](core::Size const i)protocols::loops::Loops
push_back(Loop loop)protocols::loops::Loops
push_back(core::Size const start, core::Size const stop, core::Size const cut=0, core::Real skip_rate=0.0, bool const extended=false)protocols::loops::Loops
read_loop_file()protocols::loops::Loopsprivate
read_loops_options()protocols::loops::Loops
remove_terminal_loops(core::pose::Pose const &pose)protocols::loops::Loops
sequential_order()protocols::loops::Loops
SerializedLoopList typedefprotocols::loops::Loops
set_extended(bool input)protocols::loops::Loops
set_file_reading_token(std::string const &token)protocols::loops::Loops
set_loop_file_name_and_reset(std::string const &loop_filename)protocols::loops::Loops
set_strict_looprelax_checks(bool const check)protocols::loops::Loops
setup_loops_from_data(SerializedLoopList const &loop_data)protocols::loops::Loopsprivate
size() const protocols::loops::Loops
strict_looprelax_checks()protocols::loops::Loops
strict_looprelax_checks_on_file_reads_protocols::loops::Loopsprivate
switch_movemap(core::kinematics::MoveMap &movemap, core::id::TorsionType, bool allow_moves=true) const protocols::loops::Loops
transfer_to_residue_vector(utility::vector1< T > &, T val) const protocols::loops::Loops
v_begin()protocols::loops::Loops
v_end()protocols::loops::Loops
verify_against(core::pose::Pose const &pose) const protocols::loops::Loops
write_loops_to_file(std::string const &filename, std::string token="LOOP") const protocols::loops::Loops
write_loops_to_stream(std::ostream &data, std::string token) const protocols::loops::Loops
~Loops() overrideprotocols::loops::Loops