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core::scoring::solid_surface::SurfaceEnergies Member List

This is the complete list of members for core::scoring::solid_surface::SurfaceEnergies, including all inherited members.

accumulate_residue_energies(ScoreType const &type) constcore::scoring::Energiesprivate
accumulate_residue_total_energies() constcore::scoring::Energiesprivate
accumulate_residue_total_energy() constcore::scoring::Energiesprivate
AtomID typedefcore::scoring::Energies
AtomID_Mask typedefcore::scoring::Energies
BAD enum valuecore::scoring::Energiesprivate
BasicDataCache typedefcore::scoring::Energies
clear()core::scoring::Energies
clear_energies()core::scoring::Energies
clone() const overridecore::scoring::solid_surface::SurfaceEnergiesvirtual
context_graph(scoring::ContextGraphType type) constcore::scoring::Energies
context_graph(scoring::ContextGraphType type)core::scoring::Energies
context_graphs() constcore::scoring::Energiesprotected
context_graphs_core::scoring::Energiesmutableprivate
copy_context_graphs(Energies const &other)core::scoring::Energiesprivate
copy_lr_energy_containers(Energies const &other)core::scoring::Energiesprivate
copy_nblists(Energies const &other)core::scoring::Energiesprivate
data() constcore::scoring::Energiesinline
data()core::scoring::Energiesinline
data_cache_core::scoring::Energiesprivate
delete_graph_edges_using_domain_map(utility::graph::Graph &g)core::scoring::Energiesprivate
discard_conformation_domain_map() constcore::scoring::Energies
domain_map(int const pos) constcore::scoring::Energiesinline
domain_map() constcore::scoring::Energiesinline
domain_map_core::scoring::Energiesprivate
domain_map_during_minimization(int const pos) constcore::scoring::Energiesinlineprotected
DomainMap typedefcore::scoring::Energies
Energies()core::scoring::Energies
Energies(Energies const &src)core::scoring::Energies
energies_updated() constcore::scoring::Energiesinline
energy_graph() constcore::scoring::Energies
energy_graph()core::scoring::Energies
energy_graph_core::scoring::Energiesmutableprivate
energy_graph_no_state_check()core::scoring::Energiesprotected
energy_state_core::scoring::Energiesmutableprivate
EnergyGraph typedefcore::scoring::Energies
EnergyMap typedefcore::scoring::Energies
EnergyState enum namecore::scoring::Energiesprivate
externally_required_context_graphs_core::scoring::Energiesmutableprivate
fill_point_graph(pose::Pose const &pose, conformation::PointGraphOP pg) const overridecore::scoring::solid_surface::SurfaceEnergiesprivatevirtual
finalized_energies() constcore::scoring::Energiesinline
finalized_energies()core::scoring::Energiesinline
finalized_energies_core::scoring::Energiesprivate
get_scorefxn_info() constcore::scoring::Energiesinline
GOOD enum valuecore::scoring::Energiesprivate
Graph typedefcore::scoring::Energies
graph_state_core::scoring::Energiesmutableprivate
internalize_new_domain_map()core::scoring::Energiesprivate
is_surface_core::scoring::solid_surface::SurfaceEnergiesprivate
long_range_container(methods::LongRangeEnergyType) constcore::scoring::Energies
long_range_energy_containers_core::scoring::Energiesprivate
max_context_neighbor_cutoff() constcore::scoring::Energiesprotected
max_context_neighbor_cutoff_core::scoring::Energiesmutableprivate
minimization_graph()core::scoring::Energies
minimization_graph() constcore::scoring::Energies
minimization_graph_core::scoring::Energiesprivate
MOD enum valuecore::scoring::Energiesprivate
nblist(EnergiesCacheableDataType::Enum const &type) constcore::scoring::Energies
nblist_core::scoring::Energiesprivate
neighbor_cutoff_core::scoring::solid_surface::SurfaceEnergiesmutableprivate
NeighborList typedefcore::scoring::Energies
non_surface_ranges_core::scoring::solid_surface::SurfaceEnergiesprivate
nonconst_long_range_container(methods::LongRangeEnergyType)core::scoring::Energies
onebody_energies(int const seqpos) constcore::scoring::Energiesinline
onebody_energies(int const seqpos)core::scoring::Energiesinline
onebody_energies_core::scoring::Energiesprivate
operator=(Energies const &rhs) overridecore::scoring::solid_surface::SurfaceEnergiesvirtual
owner() constcore::scoring::Energiesprotected
owner_core::scoring::Energiesprivate
parent typedefcore::scoring::solid_surface::SurfaceEnergies
point_graph()core::scoring::Energiesprotected
point_graph_core::scoring::Energiesprivate
prepare_neighbor_graphs()core::scoring::Energiesprivate
require_context_graph(scoring::ContextGraphType) constcore::scoring::Energies
require_context_graph_(scoring::ContextGraphType type, bool external) constcore::scoring::Energiesprivatevirtual
require_scoring() constcore::scoring::Energiesinlineprivate
required_context_graphs() constcore::scoring::Energiesprotected
required_context_graphs_core::scoring::Energiesmutableprivate
res_moved(int const seqpos) constcore::scoring::Energies
reset_nblist()core::scoring::Energies
reset_res_moved(int const seqpos)core::scoring::Energies
reset_surface_residue_information()core::scoring::solid_surface::SurfaceEnergies
residue_is_surface(Size seqpos) constcore::scoring::solid_surface::SurfaceEnergies
residue_neighbors_updated() constcore::scoring::Energiesinline
residue_total_energies(int const seqpos) constcore::scoring::Energiesinline
residue_total_energies_core::scoring::Energiesmutableprivate
residue_total_energies_uptodate_core::scoring::Energiesmutableprivate
residue_total_energy(int const seqpos) constcore::scoring::Energiesinline
residue_total_energy_core::scoring::Energiesmutableprivate
residue_total_energy_uptodate_core::scoring::Energiesmutableprivate
same_type_as_me(Energies const &other, bool recurse=true) const overridecore::scoring::solid_surface::SurfaceEnergiesvirtual
ScoreFunctionInfo typedefcore::scoring::Energies
scorefxn_info_core::scoring::Energiesprivate
scorefxn_weights_core::scoring::Energiesprivate
ScoreType typedefcore::scoring::Energies
scoring() constcore::scoring::Energiesinline
scoring_core::scoring::Energiesprivate
scoring_begin(scoring::ScoreFunction const &sfxn, pose::Pose const &pose)core::scoring::Energies
scoring_end(scoring::ScoreFunction const &scorefxn)core::scoring::Energies
set_long_range_container(methods::LongRangeEnergyType, LREnergyContainerOP)core::scoring::Energies
set_max_context_neighbor_cutoff(Real val) constcore::scoring::Energiesprotected
set_minimization_graph(MinimizationGraphOP)core::scoring::Energies
set_nblist(EnergiesCacheableDataType::Enum const &type, scoring::NeighborListOP nblist_in)core::scoring::Energies
set_owner(pose::Pose *owner)core::scoring::Energies
set_residue_range_not_surface(Size seqpos_begin, Size seqpos_end)core::scoring::solid_surface::SurfaceEnergies
set_scorefxn_info(scoring::ScoreFunctionInfoOP info)core::scoring::Energiesprivate
set_size(Size const size_in)core::scoring::Energiesprivate
set_total_residue(Size total_residue)core::scoring::solid_surface::SurfaceEnergies
set_use_nblist(pose::Pose const &pose, DomainMap const &domain_map_in, bool const use_nblist_auto_update)core::scoring::Energies
show(std::ostream &out) constcore::scoring::Energies
show(std::ostream &out, Size res) constcore::scoring::Energies
show() constcore::scoring::Energies
show(Size res) constcore::scoring::Energies
show_total_headers(std::ostream &out) constcore::scoring::Energies
show_totals(std::ostream &out) constcore::scoring::Energies
size() constcore::scoring::Energiesinline
size_core::scoring::Energiesprivate
structure_has_moved(Size const nres) constcore::scoring::Energies
SurfaceEnergies()core::scoring::solid_surface::SurfaceEnergies
SurfaceEnergies(SurfaceEnergies const &src)core::scoring::solid_surface::SurfaceEnergies
tenA_neighbor_graph() constcore::scoring::Energies
tenA_neighbor_graph()core::scoring::Energies
total_energies() constcore::scoring::Energies
total_energies()core::scoring::Energies
total_energies_core::scoring::Energiesmutableprivate
total_energies_weighted() constcore::scoring::Energies
total_energy() constcore::scoring::Energiesinline
total_energy()core::scoring::Energiesinline
total_energy_core::scoring::Energiesmutableprivate
total_residue_core::scoring::solid_surface::SurfaceEnergiesprivate
twelveA_neighbor_graph() constcore::scoring::Energies
twelveA_neighbor_graph()core::scoring::Energies
update_component_energies() constcore::scoring::Energiesprivate
update_domainmap_for_lr_energy_container(LREnergyContainerOP lrec)core::scoring::Energiesprivate
update_neighbor_links(pose::Pose const &pose)core::scoring::Energiesprivatevirtual
update_residue_neighbors(DomainMap const &domain_map_in, pose::Pose const &pose)core::scoring::Energies
use_nblist() constcore::scoring::Energiesinline
use_nblist_core::scoring::Energiesprivate
use_nblist_auto_update() constcore::scoring::Energiesinline
use_nblist_auto_update_core::scoring::Energiesprivate
use_nblist_of_type(EnergiesCacheableDataType::Enum const &type) constcore::scoring::Energiesinline
weights() constcore::scoring::Energies
weights(EnergyMap new_weights)core::scoring::Energies
~Energies() overridecore::scoring::Energies
~SurfaceEnergies() overridecore::scoring::solid_surface::SurfaceEnergies