Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::IntraRepeatContactFilter Class Reference

#include <IntraRepeatContactFilter.hh>

Inheritance diagram for protocols::simple_filters::IntraRepeatContactFilter:
Inheritance graph

Public Types

typedef protocols::filters::Filter Super
typedef protocols::filters::Filter Filter
typedef protocols::filters::FilterOP FilterOP
typedef core::Size Size
typedef core::Real Real
typedef core::pose::Pose Pose
typedef std::string String
typedef utility::tag::TagCOP TagCOP
typedef basic::datacache::DataMap DataMap

Public Member Functions

 IntraRepeatContactFilter ()
 IntraRepeatContactFilter (IntraRepeatContactFilter const &rval)
 ~IntraRepeatContactFilter () override=default
filters::FilterOP clone () const override
filters::FilterOP fresh_instance () const override
void filtered_value (Real const &value)
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
bool apply (Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
Real report_sm (Pose const &pose) const override
 used to report filter internals through a score or silent file More...
void report (std::ostream &out, Pose const &pose) const override
 used to report score More...
Real compute (Pose const &pose) const
std::string name () const override
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 ~Filter () override
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions

static std::string class_name ()
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes

Real filtered_value_
core::Size numbRepeats_
core::Size sequenceSep_
Real distThresh_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Member Typedef Documentation

◆ DataMap

◆ Filter

◆ FilterOP

◆ Pose

◆ Real

◆ Size

◆ String

◆ Super

◆ TagCOP

Constructor & Destructor Documentation

◆ IntraRepeatContactFilter() [1/2]

protocols::simple_filters::IntraRepeatContactFilter::IntraRepeatContactFilter ( )

◆ IntraRepeatContactFilter() [2/2]

protocols::simple_filters::IntraRepeatContactFilter::IntraRepeatContactFilter ( IntraRepeatContactFilter const &  rval)

◆ ~IntraRepeatContactFilter()

protocols::simple_filters::IntraRepeatContactFilter::~IntraRepeatContactFilter ( )

Member Function Documentation

◆ apply()

bool protocols::simple_filters::IntraRepeatContactFilter::apply ( Pose const &  pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filtered_value_, and protocols::simple_filters::tr().

◆ class_name()

std::string protocols::simple_filters::IntraRepeatContactFilter::class_name ( )

◆ clone()

filters::FilterOP protocols::simple_filters::IntraRepeatContactFilter::clone ( ) const

◆ compute()

IntraRepeatContactFilter::Real protocols::simple_filters::IntraRepeatContactFilter::compute ( Pose const &  pose) const

◆ filtered_value()

void protocols::simple_filters::IntraRepeatContactFilter::filtered_value ( Real const &  value)

References filtered_value_.

◆ fresh_instance()

filters::FilterOP protocols::simple_filters::IntraRepeatContactFilter::fresh_instance ( ) const

◆ name()

std::string protocols::simple_filters::IntraRepeatContactFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::simple_filters::IntraRepeatContactFilter::parse_my_tag ( TagCOP  tag,

◆ provide_xml_schema()

void protocols::simple_filters::IntraRepeatContactFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)

◆ report()

void protocols::simple_filters::IntraRepeatContactFilter::report ( std::ostream &  out,
Pose const &  pose 
) const

used to report score

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

◆ report_sm()

IntraRepeatContactFilter::Real protocols::simple_filters::IntraRepeatContactFilter::report_sm ( Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

◆ distThresh_

Real protocols::simple_filters::IntraRepeatContactFilter::distThresh_

Referenced by compute(), and parse_my_tag().

◆ filtered_value_

Real protocols::simple_filters::IntraRepeatContactFilter::filtered_value_

Referenced by apply(), filtered_value(), and parse_my_tag().

◆ numbRepeats_

core::Size protocols::simple_filters::IntraRepeatContactFilter::numbRepeats_

Referenced by compute(), and parse_my_tag().

◆ sequenceSep_

core::Size protocols::simple_filters::IntraRepeatContactFilter::sequenceSep_

Referenced by compute(), and parse_my_tag().

The documentation for this class was generated from the following files: