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Namespaces | Functions
SpliceIn.cc File Reference
#include <core/pose/extra_pose_info_util.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/InnerJob.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/splice/SpliceSegment.hh>
#include <protocols/splice/TailSegmentMover.hh>
#include <protocols/splice/SpliceIn.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <protocols/task_operations/PreventChainFromRepackingOperation.hh>
#include <protocols/splice/SpliceInCreator.hh>
#include <utility/string_util.hh>
#include <utility/exit.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/chemical/AA.hh>
#include <protocols/protein_interface_design/filters/TorsionFilter.hh>
#include <protocols/protein_interface_design/util.hh>
#include <boost/algorithm/string/predicate.hpp>
#include <protocols/task_operations/RestrictChainToRepackingOperation.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <core/pose/PDBInfo.hh>
#include <core/chemical/AtomType.fwd.hh>
#include <core/chemical/Atom.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <protocols/enzdes/AddorRemoveCsts.hh>
#include <protocols/splice/util.hh>
#include <protocols/moves/Mover.hh>
#include <core/id/SequenceMapping.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/conformation/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <basic/Tracer.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/datacache/DataMapObj.hh>
#include <protocols/minimization_packing/RotamerTrialsMinMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <protocols/protein_interface_design/movers/AddChainBreak.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <sstream>
#include <algorithm>
#include <string>
#include <boost/algorithm/string.hpp>
#include <core/conformation/Residue.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueProperty.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/task_operations/DesignAroundOperation.hh>
#include <protocols/task_operations/ProteinInterfaceDesignOperation.hh>
#include <protocols/task_operations/ThreadSequenceOperation.hh>
#include <protocols/task_operations/SeqprofConsensusOperation.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_CCD.hh>
#include <numeric/xyzVector.hh>
#include <protocols/loops/FoldTreeFromLoopsWrapper.hh>
#include <protocols/protein_interface_design/movers/LoopLengthChange.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/SequenceProfileConstraint.hh>
#include <core/scoring/constraints/Constraints.hh>
#include <core/scoring/func/Func.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <numeric/constants.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/Energies.hh>
#include <numeric/xyz.functions.hh>
#include <protocols/simple_moves/CutChainMover.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <fstream>
#include <ctime>
#include <protocols/splice/RBInMover.hh>
#include <protocols/splice/RBOutMover.hh>
#include <protocols/toolbox/superimpose.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <core/conformation/ResidueFactory.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::splice
 

Functions

static basic::Tracer protocols::splice::TR_constraints ("protocols.splice.Splice_constraints")
 
static basic::Tracer protocols::splice::TR ("protocols.splice.SpliceIn")
 
static basic::Tracer protocols::splice::TR_pssm ("protocols.splice.Splice_pssm")
 
std::string protocols::splice::SpliceIn_complex_type_name_for_subsubtag (std::string const &foo)
 
std::string protocols::splice::SpliceIn_complex_type_name_for_subtag (std::string const &foo)
 

Detailed Description

Author
Gideon Lapidoth (glapi.nosp@m.doth.nosp@m.@gmai.nosp@m.l.co.nosp@m.m)