Rosetta
Classes | Typedefs | Functions
protocols::loops::loop_closure::kinematic_closure Namespace Reference

Classes

class  KinematicMover
 A mover class for performing kinematic loop closure on a peptide segment @detail. More...
 
class  KinematicPerturber
 pure virtual base class for KinematicPerturber. KinematicPerturbers determine HOW loops should be perturbed. The base class contains a provision for determining WHERE they should be perturbed: MoveMap sensitivity. More...
 
class  TorsionSamplingKinematicPerturber
 torsion sampling kinematic perturber More...
 
class  VicinitySamplingKinematicPerturber
 vicinity sampling kinematic perturber More...
 
class  TorsionSweepingKinematicPerturber
 WARNING WARNING UNTESTED!!!! torsion sweeping kinematic perturber. More...
 
class  NeighborDependentTorsionSamplingKinematicPerturber
 neighbor-dependent torsion sampling kinematic perturber – uses rama2b for phi/psi lookup More...
 
class  TorsionRestrictedKinematicPerturber
 torsion-restricted kinematic perturber (still samples randomly, but only within a given torsion bin) More...
 
class  BaseTabooPerturber
 Taboo-sampling perturber base class, the two variants of which, share much code in common, but interface with separate Ramachandran potentials. More...
 
class  TabooSamplingKinematicPerturber
 Taboo-sampling kinematic perturber (still samples randomly, but only within a specific torsion bin, and the Taboo sampler ensures that this torsion bin is varied in each iteration) More...
 
class  NeighborDependentTabooSamplingKinematicPerturber
 Neighbor-dependent Taboo-sampling kinematic perturber (still samples randomly, but only within a given torsion bin; the Taboo sampler ensures that this torsion bin is varied in each iteration) that uses neighbor-dependent Ramachandran distributions (rama2b) More...
 
class  KinematicWrapper
 

Typedefs

typedef utility::pointer::shared_ptr< KinematicMoverKinematicMoverOP
 
typedef utility::pointer::shared_ptr< KinematicMover const > KinematicMoverCOP
 
typedef utility::pointer::weak_ptr< KinematicMover const > KinematicMoverCAP
 
typedef utility::pointer::shared_ptr< KinematicPerturberKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< KinematicPerturber const > KinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< TorsionSamplingKinematicPerturberTorsionSamplingKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< TorsionSamplingKinematicPerturber const > TorsionSamplingKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< SmallMoveKinematicPerturber > SmallMoveKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< SmallMoveKinematicPerturber const > SmallMoveKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< PivotBasedKinematicPerturber > PivotBasedKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< PivotBasedKinematicPerturber const > PivotBasedKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< VicinitySamplingKinematicPerturberVicinitySamplingKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< VicinitySamplingKinematicPerturber const > VicinitySamplingKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< TorsionSweepingKinematicPerturberTorsionSweepingKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< TorsionSweepingKinematicPerturber const > TorsionSweepingKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< NeighborDependentTorsionSamplingKinematicPerturberNeighborDependentTorsionSamplingKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< NeighborDependentTorsionSamplingKinematicPerturber const > NeighborDependentTorsionSamplingKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< NeighborDependentTabooSamplingKinematicPerturberNeighborDependentTabooSamplingKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< NeighborDependentTabooSamplingKinematicPerturber const > NeighborDependentTabooSamplingKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< TorsionRestrictedKinematicPerturberTorsionRestrictedKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< TorsionRestrictedKinematicPerturber const > TorsionRestrictedKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< TabooSamplingKinematicPerturberTabooSamplingKinematicPerturberOP
 
typedef utility::pointer::shared_ptr< TabooSamplingKinematicPerturber const > TabooSamplingKinematicPerturberCOP
 
typedef utility::pointer::shared_ptr< KinematicWrapperKinematicWrapperOP
 
typedef utility::pointer::shared_ptr< KinematicWrapper const > KinematicWrapperCOP
 

Functions

static basic::Tracer TR ("protocols.loops.loop_closure.kinematic_closure.KinematicPerturber")
 

Typedef Documentation

◆ KinematicMoverCAP

◆ KinematicMoverCOP

◆ KinematicMoverOP

◆ KinematicPerturberCOP

◆ KinematicPerturberOP

◆ KinematicWrapperCOP

◆ KinematicWrapperOP

◆ NeighborDependentTabooSamplingKinematicPerturberCOP

◆ NeighborDependentTabooSamplingKinematicPerturberOP

◆ NeighborDependentTorsionSamplingKinematicPerturberCOP

◆ NeighborDependentTorsionSamplingKinematicPerturberOP

◆ PivotBasedKinematicPerturberCOP

typedef utility::pointer::shared_ptr< PivotBasedKinematicPerturber const > protocols::loops::loop_closure::kinematic_closure::PivotBasedKinematicPerturberCOP

◆ PivotBasedKinematicPerturberOP

typedef utility::pointer::shared_ptr< PivotBasedKinematicPerturber > protocols::loops::loop_closure::kinematic_closure::PivotBasedKinematicPerturberOP

◆ SmallMoveKinematicPerturberCOP

typedef utility::pointer::shared_ptr< SmallMoveKinematicPerturber const > protocols::loops::loop_closure::kinematic_closure::SmallMoveKinematicPerturberCOP

◆ SmallMoveKinematicPerturberOP

typedef utility::pointer::shared_ptr< SmallMoveKinematicPerturber > protocols::loops::loop_closure::kinematic_closure::SmallMoveKinematicPerturberOP

◆ TabooSamplingKinematicPerturberCOP

◆ TabooSamplingKinematicPerturberOP

◆ TorsionRestrictedKinematicPerturberCOP

◆ TorsionRestrictedKinematicPerturberOP

◆ TorsionSamplingKinematicPerturberCOP

◆ TorsionSamplingKinematicPerturberOP

◆ TorsionSweepingKinematicPerturberCOP

◆ TorsionSweepingKinematicPerturberOP

◆ VicinitySamplingKinematicPerturberCOP

◆ VicinitySamplingKinematicPerturberOP

Function Documentation

◆ TR()

static basic::Tracer protocols::loops::loop_closure::kinematic_closure::TR ( "protocols.loops.loop_closure.kinematic_closure.KinematicPerturber"  )
static