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protocols::loops::loop_closure::kinematic_closure Namespace Reference

Classes

class  BaseTabooPerturber
 Taboo-sampling perturber base class, the two variants of which, share much code in common, but interface with separate Ramachandran potentials. More...
 
class  KinematicMover
 A mover class for performing kinematic loop closure on a peptide segment . More...
 
class  KinematicPerturber
 pure virtual base class for KinematicPerturber. KinematicPerturbers determine HOW loops should be perturbed. The base class contains a provision for determining WHERE they should be perturbed: MoveMap sensitivity. More...
 
class  KinematicWrapper
 
class  NeighborDependentTabooSamplingKinematicPerturber
 Neighbor-dependent Taboo-sampling kinematic perturber (still samples randomly, but only within a given torsion bin; the Taboo sampler ensures that this torsion bin is varied in each iteration) that uses neighbor-dependent Ramachandran distributions (rama2b) More...
 
class  NeighborDependentTorsionSamplingKinematicPerturber
 neighbor-dependent torsion sampling kinematic perturber – uses rama2b for phi/psi lookup More...
 
class  TabooSamplingKinematicPerturber
 Taboo-sampling kinematic perturber (still samples randomly, but only within a specific torsion bin, and the Taboo sampler ensures that this torsion bin is varied in each iteration) More...
 
class  TorsionRestrictedKinematicPerturber
 torsion-restricted kinematic perturber (still samples randomly, but only within a given torsion bin) More...
 
class  TorsionSamplingKinematicPerturber
 torsion sampling kinematic perturber More...
 
class  TorsionSweepingKinematicPerturber
 WARNING WARNING UNTESTED!!!! torsion sweeping kinematic perturber. More...
 
class  VicinitySamplingKinematicPerturber
 vicinity sampling kinematic perturber More...
 

Typedefs

typedef
utility::pointer::shared_ptr
< KinematicMover
KinematicMoverOP
 
typedef
utility::pointer::shared_ptr
< KinematicMover const > 
KinematicMoverCOP
 
typedef
utility::pointer::weak_ptr
< KinematicMover const > 
KinematicMoverCAP
 
typedef
utility::pointer::shared_ptr
< KinematicPerturber
KinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< KinematicPerturber const > 
KinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< TorsionSamplingKinematicPerturber
TorsionSamplingKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< TorsionSamplingKinematicPerturber
const > 
TorsionSamplingKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< SmallMoveKinematicPerturber > 
SmallMoveKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< SmallMoveKinematicPerturber
const > 
SmallMoveKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< PivotBasedKinematicPerturber > 
PivotBasedKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< PivotBasedKinematicPerturber
const > 
PivotBasedKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< VicinitySamplingKinematicPerturber
VicinitySamplingKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< VicinitySamplingKinematicPerturber
const > 
VicinitySamplingKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< TorsionSweepingKinematicPerturber
TorsionSweepingKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< TorsionSweepingKinematicPerturber
const > 
TorsionSweepingKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< NeighborDependentTorsionSamplingKinematicPerturber
NeighborDependentTorsionSamplingKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< NeighborDependentTorsionSamplingKinematicPerturber
const > 
NeighborDependentTorsionSamplingKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< NeighborDependentTabooSamplingKinematicPerturber
NeighborDependentTabooSamplingKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< NeighborDependentTabooSamplingKinematicPerturber
const > 
NeighborDependentTabooSamplingKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< TorsionRestrictedKinematicPerturber
TorsionRestrictedKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< TorsionRestrictedKinematicPerturber
const > 
TorsionRestrictedKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< TabooSamplingKinematicPerturber
TabooSamplingKinematicPerturberOP
 
typedef
utility::pointer::shared_ptr
< TabooSamplingKinematicPerturber
const > 
TabooSamplingKinematicPerturberCOP
 
typedef
utility::pointer::shared_ptr
< KinematicWrapper
KinematicWrapperOP
 
typedef
utility::pointer::shared_ptr
< KinematicWrapper const > 
KinematicWrapperCOP
 

Functions

static basic::Tracer TR ("protocols.loops.loop_closure.kinematic_closure.KinematicPerturber")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< PivotBasedKinematicPerturber const > protocols::loops::loop_closure::kinematic_closure::PivotBasedKinematicPerturberCOP
typedef utility::pointer::shared_ptr< PivotBasedKinematicPerturber > protocols::loops::loop_closure::kinematic_closure::PivotBasedKinematicPerturberOP
typedef utility::pointer::shared_ptr< SmallMoveKinematicPerturber const > protocols::loops::loop_closure::kinematic_closure::SmallMoveKinematicPerturberCOP
typedef utility::pointer::shared_ptr< SmallMoveKinematicPerturber > protocols::loops::loop_closure::kinematic_closure::SmallMoveKinematicPerturberOP

Function Documentation

static basic::Tracer protocols::loops::loop_closure::kinematic_closure::TR ( "protocols.loops.loop_closure.kinematic_closure.KinematicPerturber"  )
static