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Rosetta
2021.07
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Namespaces | |
perturb | |
refine | |
Classes | |
class | IndependentLoopMover |
class | LoopCM |
class | LoopCMCreator |
class | LoopMover |
The loop-rebuild protocol. More... | |
Typedefs | |
typedef utility::pointer::shared_ptr < IndependentLoopMover > | IndependentLoopMoverOP |
typedef utility::pointer::shared_ptr < IndependentLoopMover const > | IndependentLoopMoverCOP |
typedef utility::pointer::shared_ptr < LoopCM > | LoopCMOP |
typedef utility::pointer::shared_ptr < LoopCM const > | LoopCMCOP |
typedef utility::pointer::weak_ptr < LoopCM > | LoopCMAP |
typedef utility::pointer::weak_ptr < LoopCM const > | LoopCMCAP |
typedef utility::pointer::shared_ptr < LoopMover > | LoopMoverOP |
typedef utility::pointer::shared_ptr < LoopMover const > | LoopMoverCOP |
typedef utility::pointer::weak_ptr < LoopMover > | LoopMoverAP |
typedef utility::pointer::weak_ptr < LoopMover const > | LoopMoverCAP |
typedef utility::pointer::shared_ptr < MultiLoopMover > | MultiLoopMoverOP |
typedef utility::pointer::shared_ptr < MultiLoopMover const > | MultiLoopMoverCOP |
typedef utility::pointer::shared_ptr < SingleLoopMover > | SingleLoopMoverOP |
typedef utility::pointer::shared_ptr < SingleLoopMover const > | SingleLoopMoverCOP |
Enumerations | |
enum | LoopResult { Success, CriticalFailure, Failure, ExtendFailure } |
Functions | |
static basic::Tracer | tr ("protocols.loops.loop_mover.LoopCM", basic::t_info) |
std::string const | CCD ("CCD") |
std::string const | KIC ("KIC") |
std::string const | PERTURB ("perturb") |
std::string const | REFINE ("refine") |
std::string const | UNSET ("[NOT SET]") |
bool | ang_delta (core::Real const &a, core::Real const &b) |
void | loops_set_chainbreak_weight (core::scoring::ScoreFunctionOP scorefxn, core::Size const round) |
typedef utility::pointer::shared_ptr< IndependentLoopMover const > protocols::loops::loop_mover::IndependentLoopMoverCOP |
typedef utility::pointer::shared_ptr< IndependentLoopMover > protocols::loops::loop_mover::IndependentLoopMoverOP |
typedef utility::pointer::weak_ptr< LoopCM > protocols::loops::loop_mover::LoopCMAP |
typedef utility::pointer::weak_ptr< LoopCM const > protocols::loops::loop_mover::LoopCMCAP |
typedef utility::pointer::shared_ptr< LoopCM const > protocols::loops::loop_mover::LoopCMCOP |
typedef utility::pointer::shared_ptr< LoopCM > protocols::loops::loop_mover::LoopCMOP |
typedef utility::pointer::weak_ptr< LoopMover > protocols::loops::loop_mover::LoopMoverAP |
typedef utility::pointer::weak_ptr< LoopMover const > protocols::loops::loop_mover::LoopMoverCAP |
typedef utility::pointer::shared_ptr< LoopMover const > protocols::loops::loop_mover::LoopMoverCOP |
typedef utility::pointer::shared_ptr< LoopMover > protocols::loops::loop_mover::LoopMoverOP |
typedef utility::pointer::shared_ptr< MultiLoopMover const > protocols::loops::loop_mover::MultiLoopMoverCOP |
typedef utility::pointer::shared_ptr< MultiLoopMover > protocols::loops::loop_mover::MultiLoopMoverOP |
typedef utility::pointer::shared_ptr< SingleLoopMover const > protocols::loops::loop_mover::SingleLoopMoverCOP |
typedef utility::pointer::shared_ptr< SingleLoopMover > protocols::loops::loop_mover::SingleLoopMoverOP |
bool protocols::loops::loop_mover::ang_delta | ( | core::Real const & | a, |
core::Real const & | b | ||
) |
References protocols::environment::TOLERANCE.
std::string const protocols::loops::loop_mover::CCD | ( | "CCD" | ) |
std::string const protocols::loops::loop_mover::KIC | ( | "KIC" | ) |
void protocols::loops::loop_mover::loops_set_chainbreak_weight | ( | core::scoring::ScoreFunctionOP | scorefxn, |
core::Size const | round | ||
) |
References core::scoring::chainbreak, and core::scoring::linear_chainbreak.
Referenced by protocols::loops::loop_mover::refine::LoopMover_Refine_KIC::apply(), protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC::LoopMover_Perturb_KIC(), protocols::relax::loop::LoopRelaxMover::parse_my_tag(), protocols::relax::loop::LoopRelaxMover::set_defaults_(), and protocols::loop_modeling::LoopProtocol::start_protocol().
std::string const protocols::loops::loop_mover::PERTURB | ( | "perturb" | ) |
std::string const protocols::loops::loop_mover::REFINE | ( | "refine" | ) |
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static |
std::string const protocols::loops::loop_mover::UNSET | ( | "" | [NOT SET] | ) |
Referenced by protocols::loops::loop_mover::LoopCM::build_mover().