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protocols::abinitio::FixTemplateJumpSetup Class Reference

#include <TemplateJumpSetup.hh>

Inheritance diagram for protocols::abinitio::FixTemplateJumpSetup:
Inheritance graph
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Public Member Functions

 FixTemplateJumpSetup (TemplatesCOP templates, core::fragment::SecondaryStructureCOP secstruct, PairingStatisticsCOP, core::scoring::dssp::PairingList const &, jumping::BaseJumpSetupOP jump_def)
 
 ~FixTemplateJumpSetup () override
 
 FixTemplateJumpSetup (TemplateJumpSetup const &templ, jumping::BaseJumpSetupOP jump_def)
 
jumping::JumpSample create_jump_sample () const override
 
- Public Member Functions inherited from protocols::abinitio::TemplateJumpSetup
 TemplateJumpSetup (TemplatesCOP templates, core::fragment::SecondaryStructureCOP secstruct, PairingStatisticsCOP, core::scoring::dssp::PairingList const &helix_pairings)
 
 ~TemplateJumpSetup () override
 
std::string type_name () const override
 
jumping::JumpSample clean_jumps (jumping::JumpSample const &) const override
 take from a given JumpSample only those Jumps, which could also have been created by create_jump_sample() More...
 
core::fragment::FragSetOP generate_jump_frags (jumping::JumpSample const &, core::kinematics::MoveMap const &) const override
 returns an ordered FragSet that is compatible with the JumpSample default: generate jumps from ss-library according to JumpSample More...
 
bool is_helix_jump (core::scoring::dssp::Pairing const &p) const
 
- Public Member Functions inherited from protocols::jumping::BaseJumpSetup
 ~BaseJumpSetup () override
 Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
 

Private Attributes

jumping::BaseJumpSetupOP jump_def_
 

Constructor & Destructor Documentation

protocols::abinitio::FixTemplateJumpSetup::FixTemplateJumpSetup ( TemplatesCOP  templates,
core::fragment::SecondaryStructureCOP  secstruct,
PairingStatisticsCOP  strand_stats,
core::scoring::dssp::PairingList const &  helix_pairings,
jumping::BaseJumpSetupOP  jump_def 
)
protocols::abinitio::FixTemplateJumpSetup::~FixTemplateJumpSetup ( )
overridedefault
protocols::abinitio::FixTemplateJumpSetup::FixTemplateJumpSetup ( TemplateJumpSetup const &  templ,
jumping::BaseJumpSetupOP  jump_def 
)

Member Function Documentation

JumpSample protocols::abinitio::FixTemplateJumpSetup::create_jump_sample ( ) const
overridevirtual

Reimplemented from protocols::abinitio::TemplateJumpSetup.

References jump_def_.

Member Data Documentation

jumping::BaseJumpSetupOP protocols::abinitio::FixTemplateJumpSetup::jump_def_
private

Referenced by create_jump_sample().


The documentation for this class was generated from the following files: