#include <SaveResfileToDiskFilter.hh>

Inheritance diagram for protocols::simple_filters::SaveResfileToDiskFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

Public Member Functions
	SaveResfileToDiskFilter ()

	SaveResfileToDiskFilter (core::pack::task::TaskFactoryOP task_factory, utility::vector1< core::Size > const &selected_resis, bool const designable_only, std::string const &resfile_name, std::string const &resfile_suffix, std::string const &resfile_prefix, std::string const &resfile_general_property, std::string const &selected_resis_property)

	SaveResfileToDiskFilter (SaveResfileToDiskFilter const &rval)

	~SaveResfileToDiskFilter () override

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

void	task_factory (core::pack::task::TaskFactoryOP task_factory)

void	selected_resis (utility::vector1< core::Size > const r)

void	designable_only (bool const d)

void	renumber_pdb (bool const r)

void	resfile_name (std::string const &n)

void	resfile_suffix (std::string const &s)

void	resfile_prefix (std::string const &p)

void	resfile_general_property (std::string const &g)

void	selected_resis_property (std::string const &g)

core::pack::task::TaskFactoryOP	task_factory () const

utility::vector1< core::Size >	selected_resis () const

bool	designable_only () const

bool	renumber_pdb () const

std::string	resfile_name () const

std::string	resfile_suffix () const

std::string	resfile_prefix () const

std::string	resfile_general_property () const

std::string	selected_resis_property () const

void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
	parse xml More...

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

utility::vector1< core::Size >	select_residues (Pose const &pose) const
	Applies the TaskOperations specified in the xml, and then selects either. More...

void	write_resfile (Pose const &pose, utility::vector1< core::Size > const &selected_residues) const
	Write the resfile to disk. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_

utility::vector1< core::Size >	selected_resis_

bool	designable_only_

bool	renumber_pdb_

std::string	resfile_name_

std::string	resfile_suffix_

std::string	resfile_prefix_

std::string	resfile_general_property_

std::string	selected_resis_property_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

◆ DataMap

typedef basic::datacache::DataMap protocols::simple_filters::SaveResfileToDiskFilter::DataMap

◆ Filter

typedef protocols::filters::Filter protocols::simple_filters::SaveResfileToDiskFilter::Filter

◆ FilterOP

typedef protocols::filters::FilterOP protocols::simple_filters::SaveResfileToDiskFilter::FilterOP

◆ Pose

typedef core::pose::Pose protocols::simple_filters::SaveResfileToDiskFilter::Pose

◆ Real

typedef core::Real protocols::simple_filters::SaveResfileToDiskFilter::Real

◆ Super

typedef protocols::filters::Filter protocols::simple_filters::SaveResfileToDiskFilter::Super

◆ TagCOP

typedef utility::tag::TagCOP protocols::simple_filters::SaveResfileToDiskFilter::TagCOP

Constructor & Destructor Documentation

◆ SaveResfileToDiskFilter() [1/3]

protocols::simple_filters::SaveResfileToDiskFilter::SaveResfileToDiskFilter ( )

◆ SaveResfileToDiskFilter() [2/3]

protocols::simple_filters::SaveResfileToDiskFilter::SaveResfileToDiskFilter	(	core::pack::task::TaskFactoryOP	task_factory,
		utility::vector1< core::Size > const &	selected_resis,
		bool const	designable_only,
		std::string const &	resfile_name,
		std::string const &	resfile_suffix,
		std::string const &	resfile_prefix,
		std::string const &	resfile_general_property,
		std::string const &	selected_resis_property
	)

◆ SaveResfileToDiskFilter() [3/3]

protocols::simple_filters::SaveResfileToDiskFilter::SaveResfileToDiskFilter ( SaveResfileToDiskFilter const & rval )

default

◆ ~SaveResfileToDiskFilter()

protocols::simple_filters::SaveResfileToDiskFilter::~SaveResfileToDiskFilter ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::simple_filters::SaveResfileToDiskFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References select_residues(), and write_resfile().

◆ class_name()

std::string protocols::simple_filters::SaveResfileToDiskFilter::class_name ( )

static

Referenced by protocols::simple_filters::SaveResfileToDiskFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

protocols::filters::FilterOP protocols::simple_filters::SaveResfileToDiskFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ designable_only() [1/2]

bool protocols::simple_filters::SaveResfileToDiskFilter::designable_only ( ) const

References designable_only_.

Referenced by parse_my_tag().

◆ designable_only() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::designable_only ( bool const d )

References designable_only_.

◆ fresh_instance()

protocols::filters::FilterOP protocols::simple_filters::SaveResfileToDiskFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ name()

std::string protocols::simple_filters::SaveResfileToDiskFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::simple_filters::SaveResfileToDiskFilter::parse_my_tag	(	TagCOP	tag,
		basic::datacache::DataMap &	data
	)

overridevirtual

parse xml

Reimplemented from protocols::filters::Filter.

References designable_only(), core::pack::task::parse_task_operations(), renumber_pdb(), resfile_general_property(), resfile_name(), resfile_prefix(), resfile_suffix(), selected_resis_property(), and task_factory().

◆ provide_xml_schema()

void protocols::simple_filters::SaveResfileToDiskFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::pack::task::attributes_for_parse_task_operations(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::SaveResfileToDiskFilterCreator::provide_xml_schema().

◆ renumber_pdb() [1/2]

bool protocols::simple_filters::SaveResfileToDiskFilter::renumber_pdb ( ) const

References renumber_pdb_.

Referenced by parse_my_tag(), and write_resfile().

◆ renumber_pdb() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::renumber_pdb ( bool const r )

References renumber_pdb_.

◆ resfile_general_property() [1/2]

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_general_property ( ) const

References resfile_general_property_.

Referenced by parse_my_tag(), and write_resfile().

◆ resfile_general_property() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::resfile_general_property ( std::string const & g )

References resfile_general_property_.

◆ resfile_name() [1/2]

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_name ( ) const

References resfile_name_.

Referenced by parse_my_tag(), and write_resfile().

◆ resfile_name() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::resfile_name ( std::string const & n )

References resfile_name_.

◆ resfile_prefix() [1/2]

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_prefix ( ) const

References resfile_prefix_.

Referenced by parse_my_tag(), and write_resfile().

◆ resfile_prefix() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::resfile_prefix ( std::string const & p )

References resfile_prefix_.

◆ resfile_suffix() [1/2]

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_suffix ( ) const

References resfile_suffix_.

Referenced by parse_my_tag(), and write_resfile().

◆ resfile_suffix() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::resfile_suffix ( std::string const & s )

References resfile_suffix_.

◆ select_residues()

utility::vector1< core::Size > protocols::simple_filters::SaveResfileToDiskFilter::select_residues ( Pose const & pose ) const

Applies the TaskOperations specified in the xml, and then selects either.

References designable_only_, core::conformation::Residue::is_protein(), core::pose::Pose::residue(), core::pose::Pose::size(), task_factory(), and protocols::simple_filters::TR().

Referenced by apply().

◆ selected_resis() [1/2]

utility::vector1< core::Size > protocols::simple_filters::SaveResfileToDiskFilter::selected_resis ( ) const

References selected_resis_.

◆ selected_resis() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::selected_resis ( utility::vector1< core::Size > const r )

References selected_resis_.

◆ selected_resis_property() [1/2]

std::string protocols::simple_filters::SaveResfileToDiskFilter::selected_resis_property ( ) const

References selected_resis_property_.

Referenced by parse_my_tag(), and write_resfile().

◆ selected_resis_property() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::selected_resis_property ( std::string const & g )

References selected_resis_property_.

◆ task_factory() [1/2]

core::pack::task::TaskFactoryOP protocols::simple_filters::SaveResfileToDiskFilter::task_factory ( ) const

References task_factory_.

Referenced by parse_my_tag(), select_residues(), and task_factory().

◆ task_factory() [2/2]

void protocols::simple_filters::SaveResfileToDiskFilter::task_factory ( core::pack::task::TaskFactoryOP task_factory )

References task_factory(), and task_factory_.

◆ write_resfile()

void protocols::simple_filters::SaveResfileToDiskFilter::write_resfile	(	Pose const &	pose,
		utility::vector1< core::Size > const &	selected_residues
	)		const

Write the resfile to disk.

References protocols::jd2::current_output_name(), core::conformation::Residue::name1(), core::conformation::membrane::out, core::pose::Pose::pdb_info(), renumber_pdb(), resfile_general_property(), resfile_name(), resfile_prefix(), resfile_suffix(), core::pose::Pose::residue(), and selected_resis_property().

Referenced by apply().

Member Data Documentation

◆ designable_only_

bool protocols::simple_filters::SaveResfileToDiskFilter::designable_only_

private

Referenced by designable_only(), and select_residues().

◆ renumber_pdb_

bool protocols::simple_filters::SaveResfileToDiskFilter::renumber_pdb_

private

Referenced by renumber_pdb().

◆ resfile_general_property_

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_general_property_

private

Referenced by resfile_general_property().

◆ resfile_name_

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_name_

private

Referenced by resfile_name().

◆ resfile_prefix_

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_prefix_

private

Referenced by resfile_prefix().

◆ resfile_suffix_

std::string protocols::simple_filters::SaveResfileToDiskFilter::resfile_suffix_

private

Referenced by resfile_suffix().

◆ selected_resis_

utility::vector1< core::Size > protocols::simple_filters::SaveResfileToDiskFilter::selected_resis_

private

Referenced by selected_resis().

◆ selected_resis_property_

std::string protocols::simple_filters::SaveResfileToDiskFilter::selected_resis_property_

private

Referenced by selected_resis_property().

◆ task_factory_

core::pack::task::TaskFactoryOP protocols::simple_filters::SaveResfileToDiskFilter::task_factory_

private

Referenced by task_factory().

The documentation for this class was generated from the following files:

src/protocols/simple_filters/SaveResfileToDiskFilter.hh
src/protocols/simple_filters/SaveResfileToDiskFilter.cc

Public Types

Public Member Functions

Static Public Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ DataMap

◆ Filter

◆ FilterOP

◆ Pose

◆ Real

◆ Super

◆ TagCOP

Constructor & Destructor Documentation

◆ SaveResfileToDiskFilter() [1/3]

◆ SaveResfileToDiskFilter() [2/3]

◆ SaveResfileToDiskFilter() [3/3]

◆ ~SaveResfileToDiskFilter()

Member Function Documentation

◆ apply()

◆ class_name()

◆ clone()

◆ designable_only() [1/2]

◆ designable_only() [2/2]

◆ fresh_instance()

◆ name()

◆ parse_my_tag()

◆ provide_xml_schema()

◆ renumber_pdb() [1/2]

◆ renumber_pdb() [2/2]

◆ resfile_general_property() [1/2]

◆ resfile_general_property() [2/2]

◆ resfile_name() [1/2]

◆ resfile_name() [2/2]

◆ resfile_prefix() [1/2]

◆ resfile_prefix() [2/2]

◆ resfile_suffix() [1/2]

◆ resfile_suffix() [2/2]

◆ select_residues()

◆ selected_resis() [1/2]

◆ selected_resis() [2/2]

◆ selected_resis_property() [1/2]

◆ selected_resis_property() [2/2]

◆ task_factory() [1/2]

◆ task_factory() [2/2]

◆ write_resfile()

Member Data Documentation

◆ designable_only_

◆ renumber_pdb_

◆ resfile_general_property_

◆ resfile_name_

◆ resfile_prefix_

◆ resfile_suffix_

◆ selected_resis_

◆ selected_resis_property_

◆ task_factory_