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ThermalSamplingMover.cc File Reference

Use a simulated tempering simulation to refine a pose. More...

#include <protocols/recces/scratch/ThermalSamplingMover.hh>
#include <protocols/recces/scratch/ThermalSamplingMoverCreator.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/kinematics/MoveMap.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/database/open.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/pose/util.hh>
#include <core/init/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/id/TorsionID.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/recces/sampler/rna/MC_RNA_Suite.hh>
#include <protocols/recces/sampler/rna/MC_RNA_MultiSuite.hh>
#include <protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.hh>
#include <protocols/recces/util.hh>
#include <protocols/recces/scratch/thermal_sampler.hh>
#include <protocols/recces/Histogram.hh>
#include <protocols/moves/SimulatedTempering.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/stepwise/sampler/rna/RNA_KIC_Sampler.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/recces.OptionKeys.gen.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <utility/pointer/memory.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::recces
 
 protocols::recces::scratch
 

Functions

static basic::Tracer TR ("protocols.recces.scratch.ThermalSamplingMover")
 
Size protocols::recces::scratch::find_likely_first_chain_ending (Pose const &pose)
 at least in the helix-strand case, will successfully distinguish a bad bond length from actual breaks More...
 
std::ostream & protocols::recces::scratch::operator<< (std::ostream &os, ThermalSamplingMover const &mover)
 

Detailed Description

Use a simulated tempering simulation to refine a pose.

Author
Andy Watkins (amw57.nosp@m.9@ny.nosp@m.u.edu)

Function Documentation

static basic::Tracer TR ( "protocols.recces.scratch.ThermalSamplingMover"  )
static