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protocols::splice::SpliceInAntibody Member List

This is the complete list of members for protocols::splice::SpliceInAntibody, including all inherited members.

abstract_parse_tag(TagCOP const tag)protocols::splice::SpliceOutvirtual
adjust_n_ter_tail_length(core::pose::Pose &pose)protocols::splice::SpliceInAntibody
adjust_template_jump(core::pose::Pose &pose)protocols::splice::SpliceInAntibody
allowed_cuts_protocols::splice::SpliceInprotected
antibody_DB(std::string const &s)protocols::splice::SpliceInAntibodyinline
antibody_DB()protocols::splice::SpliceInAntibodyinline
antibody_DB_protocols::splice::SpliceInAntibodyprivate
apply(Pose &pose) overrideprotocols::splice::SpliceInAntibodyvirtual
assign_from_res_to_res(core::pose::Pose const &pose) overrideprotocols::splice::SpliceInAntibodyvirtual
build_ideal_segment(core::pose::Pose &pose) overrideprotocols::splice::SpliceInAntibodyvirtual
call_moverprotocols::splice::SpliceOutprotected
call_mover_tail_protocols::splice::SpliceOutprotected
ccd_mover(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)protocols::splice::SpliceOut
CG_const_protocols::splice::SpliceOutprivate
check_pose_pssm_match(core::pose::PoseOP pose, utility::vector1< core::sequence::SequenceProfileOP > profile_vector)protocols::splice::SpliceOutprotected
check_source_segment()protocols::splice::SpliceOut
checkpointing_file_protocols::splice::SpliceInprotected
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::splice::SpliceInAntibodyvirtual
copy_dofs_from_source()protocols::splice::SpliceOut
create()protocols::moves::Movervirtual
current_dbase_entry_protocols::splice::SpliceInprotected
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
cut_secondarystruc(bool const r)protocols::splice::SpliceOutinline
cut_secondarystruc() constprotocols::splice::SpliceOutinline
cut_secondarystruc_protocols::splice::SpliceOutprivate
database_entry() constprotocols::splice::SpliceInAntibodyinline
database_entry(core::Size const d)protocols::splice::SpliceInAntibodyinline
database_entry_protocols::splice::SpliceInprotected
database_pdb_entry(std::string const &s)protocols::splice::SpliceInAntibodyinline
database_pdb_entry() constprotocols::splice::SpliceInAntibodyinline
database_pdb_entry_protocols::splice::SpliceInprotected
database_segment_map_protocols::splice::SpliceOutprivate
dbase_begin() constprotocols::splice::SpliceInAntibodyinline
dbase_const_iterator typedefprotocols::splice::SpliceOut
dbase_end() constprotocols::splice::SpliceInAntibodyinline
dbase_file_name() constprotocols::splice::SpliceOut
dbase_file_name(std::string const &f)protocols::splice::SpliceOut
dbase_file_name_protocols::splice::SpliceOutprivate
dbase_iterate() constprotocols::splice::SpliceInAntibodyinline
dbase_iterate(bool const d)protocols::splice::SpliceInAntibodyinline
dbase_iterate_protocols::splice::SpliceInprotected
dbase_subset_protocols::splice::SpliceInprotected
delete_hairpin(bool const b)protocols::splice::SpliceOutinline
delete_hairpin() constprotocols::splice::SpliceOutinline
delete_hairpin_protocols::splice::SpliceOutprivate
delete_hairpin_c() constprotocols::splice::SpliceOutinline
delete_hairpin_c(core::Size const c)protocols::splice::SpliceOutinline
delete_hairpin_c_protocols::splice::SpliceOutprivate
delete_hairpin_n() constprotocols::splice::SpliceOutinline
delete_hairpin_n(core::Size const c)protocols::splice::SpliceOutinline
delete_hairpin_n_protocols::splice::SpliceOutprivate
delta_lengths_protocols::splice::SpliceInprotected
design_shell_protocols::splice::SpliceOutprotected
end_dbase_subset_protocols::splice::SpliceInprotected
end_tail_dbase_subset_protocols::splice::SpliceInTailprivate
find_dbase_entry(core::pose::Pose const &pose) overrideprotocols::splice::SpliceInAntibodyvirtual
find_disulfide_postions(core::pose::Pose const &pose, utility::vector1< core::Size > &cys_pos)protocols::splice::SpliceInAntibody
find_non_active_site_cut_site(core::pose::Pose const &pose)protocols::splice::SpliceOutprotected
find_vl_vh_cut(core::pose::Pose pose)protocols::splice::SpliceInAntibody
first_pass_protocols::splice::SpliceInprotected
fold_tree_nodes_protocols::splice::SpliceOutprotected
fresh_instance() const overrideprotocols::splice::SpliceInAntibodyinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::splice::SpliceInAntibodyvirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
handle_mover_tag(TagCOP const tag, basic::datacache::DataMap &data)protocols::splice::SpliceOut
ignore_chain_break_protocols::splice::SpliceOutprotected
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
load_from_checkpoint()protocols::splice::SpliceIn
load_pdb_segments_from_pose_comments(core::pose::Pose const &p)protocols::splice::SpliceOut
min_mover(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)protocols::splice::SpliceOut
min_seg() constprotocols::splice::SpliceInAntibodyinline
min_seg(bool const d)protocols::splice::SpliceInAntibodyinline
min_seg_protocols::splice::SpliceInprotected
minimize_segment(core::pose::Pose &pose)protocols::splice::SpliceInvirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::splice::SpliceInAntibodystatic
mover_tag_protocols::splice::SpliceOutprivate
mover_type_protocols::splice::SpliceOutprotected
name()protocols::moves::Moverinlinestatic
name_for_filter()protocols::splice::SpliceOutvirtual
native_pose_protocols::moves::Moverprivate
order_segments_protocols::splice::SpliceOutprivate
pack(core::pose::Pose &pose, core::pack::task::TaskFactoryOP tf)protocols::splice::SpliceIn
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) overrideprotocols::splice::SpliceInAntibodyvirtual
parse_SpliceOut_tags(TagCOP const tag, basic::datacache::DataMap &data)protocols::splice::SpliceOut
pdb_to_H3_seq_map_protocols::splice::SpliceOutprotected
place_cut_site_in_segment(core::pose::Pose const &pose)protocols::splice::SpliceOutvirtual
Pose typedefprotocols::splice::SpliceOut
pose_cys_pos_protocols::splice::SpliceInAntibodyprivate
PoseCOP typedefprotocols::moves::Mover
protein_family_to_database_protocols::splice::SpliceOutprotected
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::splice::SpliceInAntibodystatic
randomize_cut(bool const b)protocols::splice::SpliceOutinline
randomize_cut()protocols::splice::SpliceOutinline
randomize_cut_protocols::splice::SpliceOutprivate
rb_sensitive() constprotocols::splice::SpliceOutinline
rb_sensitive(bool const r)protocols::splice::SpliceOutinline
rb_sensitive_protocols::splice::SpliceOutprivate
read_torsion_database()protocols::splice::SpliceInvirtual
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
remove_hairpin(core::pose::Pose &pose) constprotocols::splice::SpliceOut
repack_shell_protocols::splice::SpliceOutprotected
reset_status()protocols::moves::Mover
retrieve_values()protocols::splice::SpliceOutprotected
rms_cutoff() constprotocols::splice::SpliceOutinline
rms_cutoff(core::Real const r)protocols::splice::SpliceOutinline
rms_cutoff_protocols::splice::SpliceOutprivate
rms_cutoff_loop() constprotocols::splice::SpliceOutinline
rms_cutoff_loop(core::Real const r)protocols::splice::SpliceOutinline
rms_cutoff_loop_protocols::splice::SpliceOutprivate
rtmin(core::pose::Pose &pose, core::pack::task::TaskFactoryOP tf)protocols::splice::SpliceIn
save_values()protocols::splice::SpliceOutprotected
saved_fold_tree_protocols::splice::SpliceOutprivate
saved_from_res_protocols::splice::SpliceOutprivate
saved_to_res_protocols::splice::SpliceOutprivate
scorefxn(core::scoring::ScoreFunctionOP sf)protocols::splice::SpliceInAntibodyinline
scorefxn() constprotocols::splice::SpliceInAntibodyinline
scorefxn_protocols::splice::SpliceOutprotected
set_anchor_res() overrideprotocols::splice::SpliceInAntibodyvirtual
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_fold_tree_nodes(core::pose::Pose const &pose) overrideprotocols::splice::SpliceInAntibodyvirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loop_length_change(protocols::protein_interface_design::movers::LoopLengthChange &llc) overrideprotocols::splice::SpliceInAntibodyvirtual
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_source_from_to_res()protocols::splice::SpliceOutvirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
source_from_res(core::Size const c)protocols::splice::SpliceOutinline
source_from_res()protocols::splice::SpliceOutinline
source_from_res_protocols::splice::SpliceOutprivate
source_pdb() constprotocols::splice::SpliceOutinline
source_pdb(std::string const &s)protocols::splice::SpliceOutinline
source_pdb_protocols::splice::SpliceOutprivate
source_pose_protocols::splice::SpliceOutprotected
source_to_res(core::Size const c)protocols::splice::SpliceOutinline
source_to_res()protocols::splice::SpliceOutinline
source_to_res_protocols::splice::SpliceOutprivate
splice_filter() constprotocols::splice::SpliceOut
splice_filter(protocols::filters::FilterOP f)protocols::splice::SpliceOut
splice_filter_protocols::splice::SpliceOutprivate
SpliceIn()protocols::splice::SpliceIn
SpliceInAntibody()protocols::splice::SpliceInAntibody
SpliceInTail()protocols::splice::SpliceInTail
splicemanagerprotocols::splice::SpliceOutprotected
SpliceOut()protocols::splice::SpliceOut
SpliceOutFilter(core::pose::Pose *pose)protocols::splice::SpliceOut
SpliceOutRMSDFilter(core::pose::Pose *pose)protocols::splice::SpliceOut
Strings typedefprotocols::moves::Mover
submover_protocols::splice::SpliceOutprotected
superimpose_source_on_pose(core::pose::Pose const &pose, core::pose::Pose &source_pose)protocols::splice::SpliceOutvirtual
superimposed(bool const b)protocols::splice::SpliceOutinline
superimposed()protocols::splice::SpliceOutinline
superimposed_protocols::splice::SpliceOutprivate
TagCOP typedefprotocols::moves::Mover
tail_dbase_subset_protocols::splice::SpliceInTailprivate
tail_diff_protocols::splice::SpliceInAntibodyprivate
tail_mover(core::pose::Pose &pose, core::kinematics::MoveMapOP mm)protocols::splice::SpliceOut
tail_torsion_database_protocols::splice::SpliceInprotected
task_factory_protocols::splice::SpliceOutprivate
template_cys_pos_protocols::splice::SpliceInAntibodyprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
thread_original_sequence() constprotocols::splice::SpliceOutinline
thread_original_sequence(bool const s)protocols::splice::SpliceOutinline
thread_original_sequence_protocols::splice::SpliceOutprivate
tolerance_protocols::splice::SpliceOutprotected
torsion_database_protocols::splice::SpliceInprotected
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
update_vl_vh_cut()protocols::splice::SpliceInAntibody
vl_vh_cut_protocols::splice::SpliceInAntibodyprivate
write_database_to_file(core::pose::Pose const &pose)protocols::splice::SpliceOutvirtual
write_to_database_protocols::splice::SpliceOutprotected
~SpliceIn() overrideprotocols::splice::SpliceIn
~SpliceInAntibody() overrideprotocols::splice::SpliceInAntibody
~SpliceInTail() overrideprotocols::splice::SpliceInTail
~SpliceOut() overrideprotocols::splice::SpliceOut