protocols::simple_filters::SidechainRmsdFilter Class Reference

#include <SidechainRmsdFilter.hh>

Inheritance diagram for protocols::simple_filters::SidechainRmsdFilter:

Public Member Functions
	SidechainRmsdFilter ()
	SidechainRmsdFilter (std::string const &res1, std::string const &res2, core::Real const rmsd_threshold)
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
	~SidechainRmsdFilter () override
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual bool	filter_provides_citation_info () const
	Does this filter provide information about how to cite it? More...
virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...
virtual bool	filter_is_unpublished () const
	Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
std::string	res1_
std::string	res2_
core::Real	rmsd_threshold_
core::pose::PoseCOP	reference_pose_
bool	include_backbone_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::SidechainRmsdFilter::SidechainRmsdFilter

(

)

protocols::simple_filters::SidechainRmsdFilter::SidechainRmsdFilter	(	std::string const &	res1,
		std::string const &	res2,
		core::Real const	rmsd_threshold
	)

protocols::simple_filters::SidechainRmsdFilter::~SidechainRmsdFilter ( )

overridedefault

Member Function Documentation

bool protocols::simple_filters::SidechainRmsdFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), res1_, rmsd_threshold_, and protocols::simple_filters::sidechain_rmsd_filter_tracer().

std::string protocols::simple_filters::SidechainRmsdFilter::class_name ( )

static

Referenced by protocols::simple_filters::SidechainRmsdFilterCreator::keyname(), name(), parse_my_tag(), and provide_xml_schema().

filters::FilterOP protocols::simple_filters::SidechainRmsdFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

core::Real protocols::simple_filters::SidechainRmsdFilter::compute

(

core::pose::Pose const &

pose

)

const

References core::scoring::automorphic_rmsd(), core::pose::Pose::conformation(), core::conformation::copy_residue_coordinates_and_rebuild_missing_atoms(), core::conformation::ResidueFactory::create_residue(), include_backbone_, core::pose::parse_resnum(), reference_pose_, res1_, res2_, core::conformation::Conformation::residue(), core::pose::Pose::residue_type_set_for_pose(), and core::chemical::VIRTUAL_BB.

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::SidechainRmsdFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

std::string protocols::simple_filters::SidechainRmsdFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::SidechainRmsdFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References class_name(), core::pose::get_resnum_string(), include_backbone_, protocols::rosetta_scripts::legacy_saved_pose_or_input(), reference_pose_, res1_, res2_, and rmsd_threshold_.

void protocols::simple_filters::SidechainRmsdFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References core::pose::attributes_for_get_resnum_string(), protocols::rosetta_scripts::attributes_for_saved_reference_pose(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::SidechainRmsdFilterCreator::provide_xml_schema().

void protocols::simple_filters::SidechainRmsdFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and res1_.

core::Real protocols::simple_filters::SidechainRmsdFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

bool protocols::simple_filters::SidechainRmsdFilter::include_backbone_

private

Referenced by compute(), and parse_my_tag().

core::pose::PoseCOP protocols::simple_filters::SidechainRmsdFilter::reference_pose_

private

Referenced by compute(), and parse_my_tag().

std::string protocols::simple_filters::SidechainRmsdFilter::res1_

private

Referenced by apply(), compute(), parse_my_tag(), and report().

std::string protocols::simple_filters::SidechainRmsdFilter::res2_

private

Referenced by compute(), and parse_my_tag().

core::Real protocols::simple_filters::SidechainRmsdFilter::rmsd_threshold_

private

Referenced by apply(), and parse_my_tag().

---

The documentation for this class was generated from the following files:

• src/protocols/simple_filters/SidechainRmsdFilter.hh
• src/protocols/simple_filters/SidechainRmsdFilter.cc