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Public Types | Public Member Functions | Private Member Functions | Private Attributes | List of all members
core::chemical::rna::RNA_FittedTorsionInfo Class Reference

#include <RNA_FittedTorsionInfo.hh>

Inheritance diagram for core::chemical::rna::RNA_FittedTorsionInfo:
Inheritance graph
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Public Types

typedef utility::vector1< GaussianParameterGaussianParameterSet
 

Public Member Functions

 RNA_FittedTorsionInfo ()
 
 ~RNA_FittedTorsionInfo () override
 
GaussianParameterSet gaussian_parameter_set_alpha () const &
 
GaussianParameterSet gaussian_parameter_set_beta () const &
 
GaussianParameterSet gaussian_parameter_set_gamma () const &
 
GaussianParameterSet gaussian_parameter_set_delta_north () const &
 
GaussianParameterSet gaussian_parameter_set_delta_south () const &
 
GaussianParameterSet gaussian_parameter_set_epsilon_north () const &
 
GaussianParameterSet gaussian_parameter_set_epsilon_south () const &
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_minus () const &
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_plus () const &
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_ap () const &
 
GaussianParameterSet gaussian_parameter_set_chi_north () const &
 
GaussianParameterSet gaussian_parameter_set_chi_south () const &
 
GaussianParameterSet gaussian_parameter_set_nu2_north () const &
 
GaussianParameterSet gaussian_parameter_set_nu2_south () const &
 
GaussianParameterSet gaussian_parameter_set_nu1_north () const &
 
GaussianParameterSet gaussian_parameter_set_nu1_south () const &
 
Real delta_north () const
 
Real nu2_north () const
 
Real nu1_north () const
 
Real delta_south () const
 
Real nu2_south () const
 
Real nu1_south () const
 
Real alpha_aform () const
 
Real beta_aform () const
 
Real gamma_aform () const
 
Real epsilon_aform () const
 
Real zeta_aform () const
 
Real epsilon_north () const
 
Real epsilon_south () const
 
Real chi_north_anti () const
 
Real chi_north_syn () const
 
Real chi_south_anti () const
 
Real chi_south_syn () const
 
Real delta_cutoff () const
 

Private Member Functions

void init_rna_torsion_gaussian_parameters ()
 

Private Attributes

bool rna_tight_torsions_
 
GaussianParameterSet gaussian_parameter_set_alpha_
 
GaussianParameterSet gaussian_parameter_set_beta_
 
GaussianParameterSet gaussian_parameter_set_gamma_
 
GaussianParameterSet gaussian_parameter_set_delta_north_
 
GaussianParameterSet gaussian_parameter_set_delta_south_
 
GaussianParameterSet gaussian_parameter_set_epsilon_north_
 
GaussianParameterSet gaussian_parameter_set_epsilon_south_
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_minus_
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_plus_
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_ap_
 
GaussianParameterSet gaussian_parameter_set_chi_north_
 
GaussianParameterSet gaussian_parameter_set_chi_south_
 
GaussianParameterSet gaussian_parameter_set_nu2_north_
 
GaussianParameterSet gaussian_parameter_set_nu2_south_
 
GaussianParameterSet gaussian_parameter_set_nu1_north_
 
GaussianParameterSet gaussian_parameter_set_nu1_south_
 
Real const ideal_delta_north_
 
Real const ideal_nu2_north_
 
Real const ideal_nu1_north_
 
Real const ideal_delta_south_
 
Real const ideal_nu2_south_
 
Real const ideal_nu1_south_
 
Real const delta_cutoff_
 

Member Typedef Documentation

◆ GaussianParameterSet

Constructor & Destructor Documentation

◆ RNA_FittedTorsionInfo()

core::chemical::rna::RNA_FittedTorsionInfo::RNA_FittedTorsionInfo ( )

◆ ~RNA_FittedTorsionInfo()

core::chemical::rna::RNA_FittedTorsionInfo::~RNA_FittedTorsionInfo ( )
overridedefault

Member Function Documentation

◆ alpha_aform()

Real core::chemical::rna::RNA_FittedTorsionInfo::alpha_aform ( ) const
inline

◆ beta_aform()

Real core::chemical::rna::RNA_FittedTorsionInfo::beta_aform ( ) const
inline

◆ chi_north_anti()

Real core::chemical::rna::RNA_FittedTorsionInfo::chi_north_anti ( ) const
inline

◆ chi_north_syn()

Real core::chemical::rna::RNA_FittedTorsionInfo::chi_north_syn ( ) const
inline

◆ chi_south_anti()

Real core::chemical::rna::RNA_FittedTorsionInfo::chi_south_anti ( ) const
inline

◆ chi_south_syn()

Real core::chemical::rna::RNA_FittedTorsionInfo::chi_south_syn ( ) const
inline

◆ delta_cutoff()

Real core::chemical::rna::RNA_FittedTorsionInfo::delta_cutoff ( ) const
inline

◆ delta_north()

Real core::chemical::rna::RNA_FittedTorsionInfo::delta_north ( ) const
inline

◆ delta_south()

Real core::chemical::rna::RNA_FittedTorsionInfo::delta_south ( ) const
inline

◆ epsilon_aform()

Real core::chemical::rna::RNA_FittedTorsionInfo::epsilon_aform ( ) const
inline

◆ epsilon_north()

Real core::chemical::rna::RNA_FittedTorsionInfo::epsilon_north ( ) const
inline

◆ epsilon_south()

Real core::chemical::rna::RNA_FittedTorsionInfo::epsilon_south ( ) const
inline

◆ gamma_aform()

Real core::chemical::rna::RNA_FittedTorsionInfo::gamma_aform ( ) const
inline

◆ gaussian_parameter_set_alpha()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_alpha ( ) const &
inline

◆ gaussian_parameter_set_beta()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_beta ( ) const &
inline

◆ gaussian_parameter_set_chi_north()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_north ( ) const &
inline

◆ gaussian_parameter_set_chi_south()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_south ( ) const &
inline

◆ gaussian_parameter_set_delta_north()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_north ( ) const &
inline

◆ gaussian_parameter_set_delta_south()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_south ( ) const &
inline

◆ gaussian_parameter_set_epsilon_north()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_north ( ) const &
inline

◆ gaussian_parameter_set_epsilon_south()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_south ( ) const &
inline

◆ gaussian_parameter_set_gamma()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_gamma ( ) const &
inline

◆ gaussian_parameter_set_nu1_north()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_north ( ) const &
inline

◆ gaussian_parameter_set_nu1_south()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_south ( ) const &
inline

◆ gaussian_parameter_set_nu2_north()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_north ( ) const &
inline

◆ gaussian_parameter_set_nu2_south()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_south ( ) const &
inline

◆ gaussian_parameter_set_zeta_alpha_ap()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_ap ( ) const &
inline

◆ gaussian_parameter_set_zeta_alpha_sc_minus()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_minus ( ) const &
inline

◆ gaussian_parameter_set_zeta_alpha_sc_plus()

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_plus ( ) const &
inline

◆ init_rna_torsion_gaussian_parameters()

void core::chemical::rna::RNA_FittedTorsionInfo::init_rna_torsion_gaussian_parameters ( )
private

◆ nu1_north()

Real core::chemical::rna::RNA_FittedTorsionInfo::nu1_north ( ) const
inline

◆ nu1_south()

Real core::chemical::rna::RNA_FittedTorsionInfo::nu1_south ( ) const
inline

◆ nu2_north()

Real core::chemical::rna::RNA_FittedTorsionInfo::nu2_north ( ) const
inline

◆ nu2_south()

Real core::chemical::rna::RNA_FittedTorsionInfo::nu2_south ( ) const
inline

◆ zeta_aform()

Real core::chemical::rna::RNA_FittedTorsionInfo::zeta_aform ( ) const
inline

Member Data Documentation

◆ delta_cutoff_

Real const core::chemical::rna::RNA_FittedTorsionInfo::delta_cutoff_
private

Referenced by delta_cutoff().

◆ gaussian_parameter_set_alpha_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_alpha_
private

◆ gaussian_parameter_set_beta_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_beta_
private

◆ gaussian_parameter_set_chi_north_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_north_
private

◆ gaussian_parameter_set_chi_south_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_south_
private

◆ gaussian_parameter_set_delta_north_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_north_
private

◆ gaussian_parameter_set_delta_south_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_south_
private

◆ gaussian_parameter_set_epsilon_north_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_north_
private

◆ gaussian_parameter_set_epsilon_south_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_south_
private

◆ gaussian_parameter_set_gamma_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_gamma_
private

◆ gaussian_parameter_set_nu1_north_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_north_
private

◆ gaussian_parameter_set_nu1_south_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_south_
private

◆ gaussian_parameter_set_nu2_north_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_north_
private

◆ gaussian_parameter_set_nu2_south_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_south_
private

◆ gaussian_parameter_set_zeta_alpha_ap_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_ap_
private

◆ gaussian_parameter_set_zeta_alpha_sc_minus_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_minus_
private

◆ gaussian_parameter_set_zeta_alpha_sc_plus_

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_plus_
private

◆ ideal_delta_north_

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_delta_north_
private

Referenced by delta_north().

◆ ideal_delta_south_

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_delta_south_
private

Referenced by delta_south().

◆ ideal_nu1_north_

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu1_north_
private

Referenced by nu1_north().

◆ ideal_nu1_south_

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu1_south_
private

Referenced by nu1_south().

◆ ideal_nu2_north_

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu2_north_
private

Referenced by nu2_north().

◆ ideal_nu2_south_

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu2_south_
private

Referenced by nu2_south().

◆ rna_tight_torsions_

bool core::chemical::rna::RNA_FittedTorsionInfo::rna_tight_torsions_
private

The documentation for this class was generated from the following files: