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core::chemical::rna::RNA_FittedTorsionInfo Class Reference

#include <RNA_FittedTorsionInfo.hh>

Inheritance diagram for core::chemical::rna::RNA_FittedTorsionInfo:
Inheritance graph
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Public Types

typedef utility::vector1
< GaussianParameter
GaussianParameterSet
 

Public Member Functions

 RNA_FittedTorsionInfo ()
 
 ~RNA_FittedTorsionInfo () override
 
GaussianParameterSet gaussian_parameter_set_alpha () const &
 
GaussianParameterSet gaussian_parameter_set_beta () const &
 
GaussianParameterSet gaussian_parameter_set_gamma () const &
 
GaussianParameterSet gaussian_parameter_set_delta_north () const &
 
GaussianParameterSet gaussian_parameter_set_delta_south () const &
 
GaussianParameterSet gaussian_parameter_set_epsilon_north () const &
 
GaussianParameterSet gaussian_parameter_set_epsilon_south () const &
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_minus () const &
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_plus () const &
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_ap () const &
 
GaussianParameterSet gaussian_parameter_set_chi_north () const &
 
GaussianParameterSet gaussian_parameter_set_chi_south () const &
 
GaussianParameterSet gaussian_parameter_set_nu2_north () const &
 
GaussianParameterSet gaussian_parameter_set_nu2_south () const &
 
GaussianParameterSet gaussian_parameter_set_nu1_north () const &
 
GaussianParameterSet gaussian_parameter_set_nu1_south () const &
 
Real delta_north () const
 
Real nu2_north () const
 
Real nu1_north () const
 
Real delta_south () const
 
Real nu2_south () const
 
Real nu1_south () const
 
Real alpha_aform () const
 
Real beta_aform () const
 
Real gamma_aform () const
 
Real epsilon_aform () const
 
Real zeta_aform () const
 
Real epsilon_north () const
 
Real epsilon_south () const
 
Real chi_north_anti () const
 
Real chi_north_syn () const
 
Real chi_south_anti () const
 
Real chi_south_syn () const
 
Real delta_cutoff () const
 

Private Member Functions

void init_rna_torsion_gaussian_parameters ()
 

Private Attributes

bool rna_tight_torsions_
 
GaussianParameterSet gaussian_parameter_set_alpha_
 
GaussianParameterSet gaussian_parameter_set_beta_
 
GaussianParameterSet gaussian_parameter_set_gamma_
 
GaussianParameterSet gaussian_parameter_set_delta_north_
 
GaussianParameterSet gaussian_parameter_set_delta_south_
 
GaussianParameterSet gaussian_parameter_set_epsilon_north_
 
GaussianParameterSet gaussian_parameter_set_epsilon_south_
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_minus_
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_sc_plus_
 
GaussianParameterSet gaussian_parameter_set_zeta_alpha_ap_
 
GaussianParameterSet gaussian_parameter_set_chi_north_
 
GaussianParameterSet gaussian_parameter_set_chi_south_
 
GaussianParameterSet gaussian_parameter_set_nu2_north_
 
GaussianParameterSet gaussian_parameter_set_nu2_south_
 
GaussianParameterSet gaussian_parameter_set_nu1_north_
 
GaussianParameterSet gaussian_parameter_set_nu1_south_
 
Real const ideal_delta_north_
 
Real const ideal_nu2_north_
 
Real const ideal_nu1_north_
 
Real const ideal_delta_south_
 
Real const ideal_nu2_south_
 
Real const ideal_nu1_south_
 
Real const delta_cutoff_
 

Member Typedef Documentation

Constructor & Destructor Documentation

core::chemical::rna::RNA_FittedTorsionInfo::RNA_FittedTorsionInfo ( )
core::chemical::rna::RNA_FittedTorsionInfo::~RNA_FittedTorsionInfo ( )
overridedefault

Member Function Documentation

Real core::chemical::rna::RNA_FittedTorsionInfo::alpha_aform ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::beta_aform ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::chi_north_anti ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::chi_north_syn ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::chi_south_anti ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::chi_south_syn ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::delta_cutoff ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::delta_north ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::delta_south ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::epsilon_aform ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::epsilon_north ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::epsilon_south ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::gamma_aform ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_alpha ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_beta ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_north ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_south ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_north ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_south ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_north ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_south ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_gamma ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_north ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_south ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_north ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_south ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_ap ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_minus ( ) const
inline
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_plus ( ) const
inline
void core::chemical::rna::RNA_FittedTorsionInfo::init_rna_torsion_gaussian_parameters ( )
private
Real core::chemical::rna::RNA_FittedTorsionInfo::nu1_north ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::nu1_south ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::nu2_north ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::nu2_south ( ) const
inline
Real core::chemical::rna::RNA_FittedTorsionInfo::zeta_aform ( ) const
inline

Member Data Documentation

Real const core::chemical::rna::RNA_FittedTorsionInfo::delta_cutoff_
private

Referenced by delta_cutoff().

GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_alpha_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_beta_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_north_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_south_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_north_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_south_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_north_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_south_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_gamma_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_north_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_south_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_north_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_south_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_ap_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_minus_
private
GaussianParameterSet core::chemical::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_plus_
private
Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_delta_north_
private

Referenced by delta_north().

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_delta_south_
private

Referenced by delta_south().

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu1_north_
private

Referenced by nu1_north().

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu1_south_
private

Referenced by nu1_south().

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu2_north_
private

Referenced by nu2_north().

Real const core::chemical::rna::RNA_FittedTorsionInfo::ideal_nu2_south_
private

Referenced by nu2_south().

bool core::chemical::rna::RNA_FittedTorsionInfo::rna_tight_torsions_
private

The documentation for this class was generated from the following files: