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core::io::silent::SilentStruct Member List

This is the complete list of members for core::io::silent::SilentStruct, including all inherited members.

add_comment(std::string name, std::string value)core::io::silent::SilentStruct
add_energy(std::string const &scorename, Real value, Real weight=1.0)core::io::silent::SilentStruct
add_other_struct(SilentStructOP silent_struct)core::io::silent::SilentStruct
add_parent_remark(std::string const &name, std::string const &value)core::io::silent::SilentStruct
add_string_value(std::string const &scorename, std::string const &value, int const index=-1)core::io::silent::SilentStruct
add_submotif_info_from_line(std::istream &line_stream)core::io::silent::SilentStruct
cache_remarks_core::io::silent::SilentStructprivate
chains_core::io::silent::SilentStructprivate
clear_comments()core::io::silent::SilentStruct
clear_energies()core::io::silent::SilentStructinlinevirtual
clone() const =0core::io::silent::SilentStructpure virtual
comment_from_line(std::string const &line)core::io::silent::SilentStruct
comment_from_line(std::string const &line, bool const include_silentfile_comments)core::io::silent::SilentStruct
copy_scores(const SilentStruct &src_ss)core::io::silent::SilentStruct
decoy_tag() const core::io::silent::SilentStructinline
decoy_tag(std::string const &tag)core::io::silent::SilentStructinline
decoy_tag_core::io::silent::SilentStructprivate
detect_fullatom(core::Size pos, core::Size natoms, bool &fullatom, bool &well_defined)core::io::silent::SilentStructprotected
energies() const core::io::silent::SilentStructinline
energies_from_pose(core::pose::Pose const &pose)core::io::silent::SilentStruct
energies_into_pose(core::pose::Pose &pose) const core::io::silent::SilentStruct
energy_names() const core::io::silent::SilentStruct
erase_comment(std::string const &name)core::io::silent::SilentStruct
extract_writeable_cacheable_data(core::pose::Pose const &pose)core::io::silent::SilentStructprotected
figure_out_residue_numbers_from_line(std::istream &line_stream)core::io::silent::SilentStruct
figure_out_segment_ids_from_line(std::istream &line_stream)core::io::silent::SilentStruct
fill_other_struct_list(pose::Pose const &pose)core::io::silent::SilentStruct
fill_pose(core::pose::Pose &pose, bool const metapatches=true) const core::io::silent::SilentStructvirtual
fill_pose(core::pose::Pose &pose, core::chemical::ResidueTypeSetCOP residue_set, bool const metapatches=true) const core::io::silent::SilentStruct
fill_pose(core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set, bool const metapatches=true) const core::io::silent::SilentStructvirtual
fill_struct(core::pose::Pose const &pose, std::string tag="empty_tag")core::io::silent::SilentStructvirtual
fill_struct_with_residue_numbers(pose::Pose const &pose)core::io::silent::SilentStruct
fill_struct_with_submotif_info_list(pose::Pose const &pose)core::io::silent::SilentStruct
finish_pose(core::pose::Pose &pose) const core::io::silent::SilentStruct
force_bitflip() const core::io::silent::SilentStructinlinevirtual
force_bitflip_core::io::silent::SilentStructprivate
full_model_info_into_pose(pose::Pose &pose) const core::io::silent::SilentStruct
full_model_parameters() const core::io::silent::SilentStructinline
full_model_parameters_core::io::silent::SilentStructprivate
get_all_comments() const core::io::silent::SilentStruct
get_CA_xyz() const =0core::io::silent::SilentStructpure virtual
get_comment(std::string const &name) const core::io::silent::SilentStruct
get_debug_rmsd()=0core::io::silent::SilentStructpure virtual
get_energy(std::string const &scorename) const core::io::silent::SilentStruct
get_parent_remark(std::string const &name) const core::io::silent::SilentStruct
get_parent_remark_from_line(std::string const &line)core::io::silent::SilentStruct
get_self_ptr() const core::io::silent::SilentStructinline
get_self_ptr()core::io::silent::SilentStructinline
get_silent_energies()core::io::silent::SilentStructinline
get_silent_energy(std::string const &scorename) const core::io::silent::SilentStruct
get_string_value(std::string const &scorename) const core::io::silent::SilentStruct
has_comment(std::string const &name) const core::io::silent::SilentStruct
has_energy(std::string const &scorename) const core::io::silent::SilentStruct
has_parent_remark(std::string const &name) const core::io::silent::SilentStruct
init_from_lines(utility::vector1< std::string > const &lines, SilentFileData &container)=0core::io::silent::SilentStructpure virtual
mem_footprint() const core::io::silent::SilentStructinlinevirtual
nonconst_other_struct_list()core::io::silent::SilentStructinline
nres() const core::io::silent::SilentStructinlinevirtual
nres(Size nres)core::io::silent::SilentStructinline
nres_core::io::silent::SilentStructprivate
one_letter_sequence() const core::io::silent::SilentStruct
operator=(SilentStruct const &)core::io::silent::SilentStruct
options() const core::io::silent::SilentStruct
options_core::io::silent::SilentStructprivate
other_struct_list() const core::io::silent::SilentStructinline
other_struct_list_core::io::silent::SilentStructprivate
parent_remarks_map_core::io::silent::SilentStructprivate
parse_energies(std::istream &input, utility::vector1< std::string > const &energy_names)core::io::silent::SilentStruct
pdbinfo_labels_core::io::silent::SilentStructprivate
precision(core::Size precision)core::io::silent::SilentStruct
precision() const core::io::silent::SilentStruct
precision_core::io::silent::SilentStructprivate
print_comments(std::ostream &out) const core::io::silent::SilentStructvirtual
print_conformation(std::ostream &out) const =0core::io::silent::SilentStructpure virtual
print_header(std::ostream &out) const core::io::silent::SilentStructvirtual
print_parent_remarks(std::ostream &out) const core::io::silent::SilentStruct
print_residue_numbers(std::ostream &out) const core::io::silent::SilentStructvirtual
print_score_header(std::ostream &out) const core::io::silent::SilentStructvirtual
print_scores(std::ostream &out) const core::io::silent::SilentStructvirtual
print_submotif_info(std::ostream &out) const core::io::silent::SilentStructvirtual
read_score_headers(std::string const &line, utility::vector1< std::string > &enames, SilentFileData &container)core::io::silent::SilentStruct
read_sequence(std::string const &line)core::io::silent::SilentStruct
rename_energies()core::io::silent::SilentStruct
residue_numbers_core::io::silent::SilentStructprivate
residue_numbers_into_pose(pose::Pose &pose) const core::io::silent::SilentStruct
scoreline_prefix(std::string const &prefix)core::io::silent::SilentStruct
scoreline_prefix() const core::io::silent::SilentStruct
scoreline_prefix_core::io::silent::SilentStructprivate
segment_IDs_core::io::silent::SilentStructprivate
sequence() const core::io::silent::SilentStructinline
sequence(core::sequence::AnnotatedSequence const &sequence)core::io::silent::SilentStructinline
sequence_core::io::silent::SilentStructprivate
set_chains(utility::vector1< char > const &chains)core::io::silent::SilentStructinline
set_decoy_tag(std::string const &tag)core::io::silent::SilentStructinline
set_force_bitflip(bool const setting)core::io::silent::SilentStructinlinevirtual
set_full_model_parameters(core::pose::full_model_info::FullModelParametersCOP setting)core::io::silent::SilentStructinline
set_residue_numbers(utility::vector1< int > const &residue_numbers)core::io::silent::SilentStructinline
set_segment_IDs(utility::vector1< std::string > const &segids)core::io::silent::SilentStructinline
set_tag_from_pose(const core::pose::Pose &pose)core::io::silent::SilentStruct
set_valid_energies(utility::vector1< std::string > valid)core::io::silent::SilentStruct
silent_comments_core::io::silent::SilentStructprivate
silent_energies(utility::vector1< SilentEnergy > const &new_se)core::io::silent::SilentStructinline
silent_energies_core::io::silent::SilentStructprivate
SilentStruct(SilentFileOptions const &opts)core::io::silent::SilentStruct
SilentStruct(SilentStruct const &)core::io::silent::SilentStruct
sort_silent_scores()core::io::silent::SilentStruct
string typedefcore::io::silent::SilentStructprivate
submotif_info_list_core::io::silent::SilentStructmutableprivate
update_score()core::io::silent::SilentStructprivate
~SilentStruct() overridecore::io::silent::SilentStruct