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protocols::protein_interface_design::movers::DesignMinimizeHbonds Member List

This is the complete list of members for protocols::protein_interface_design::movers::DesignMinimizeHbonds, including all inherited members.

acceptors_protocols::protein_interface_design::movers::DesignMinimizeHbondsprivate
allowed_aas_protocols::calc_taskop_movers::DesignRepackMoverprotected
apply(Pose &pose) overrideprotocols::protein_interface_design::movers::DesignMinimizeHbondsvirtual
automatic_repacking_definition_protocols::calc_taskop_movers::DesignRepackMoverprotected
bb_hbond_protocols::protein_interface_design::movers::DesignMinimizeHbondsprivate
clear_info()protocols::moves::Moverinlinevirtual
clear_task()protocols::calc_taskop_movers::DesignRepackMover
clear_task_factory()protocols::calc_taskop_movers::DesignRepackMover
clone() const overrideprotocols::protein_interface_design::movers::DesignMinimizeHbondsvirtual
create()protocols::moves::Movervirtual
curr_min_bb_protocols::calc_taskop_movers::DesignRepackMoverprotected
curr_min_rb_protocols::calc_taskop_movers::DesignRepackMoverprotected
curr_min_sc_protocols::calc_taskop_movers::DesignRepackMoverprotected
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
design(bool const des)protocols::calc_taskop_movers::DesignRepackMoverinline
design() constprotocols::calc_taskop_movers::DesignRepackMoverinline
design_partner1_protocols::calc_taskop_movers::DesignRepackMoverprotected
design_partner2_protocols::calc_taskop_movers::DesignRepackMoverprotected
DesignMinimizeHbonds()protocols::protein_interface_design::movers::DesignMinimizeHbonds
DesignMinimizeHbonds(ScoreFunctionCOP scorefxn_repack, ScoreFunctionCOP scorefxn_minimize, utility::vector1< core::Size > const &target_residues, bool const donors, bool const acceptors, bool const bb_hbond, bool const sc_hbond, core::Real const hbond_energy_threshold, core::Real interface_distance_cutoff=8.0, bool const repack_partner1=true, bool const repack_partner2=false, bool const repack_non_ala=true)protocols::protein_interface_design::movers::DesignMinimizeHbonds
DesignMinimizeHbonds(ScoreFunctionOP scorefxn_repack, ScoreFunctionOP scorefxn_minimize, core::Size const target_residue, bool const donors, bool const acceptors, bool const bb_hbond, bool const sc_hbond, core::Real const hbond_energy_threshold, core::Real interface_distance_cutoff=8.0, bool const repack_partner1=true, bool const repack_partner2=false, bool const repack_non_ala=true)protocols::protein_interface_design::movers::DesignMinimizeHbonds
DesignRepackMover()protocols::calc_taskop_movers::DesignRepackMover
DesignRepackMover(std::string const &name)protocols::calc_taskop_movers::DesignRepackMover
donors_protocols::protein_interface_design::movers::DesignMinimizeHbondsprivate
fresh_instance() const overrideprotocols::protein_interface_design::movers::DesignMinimizeHbondsinlinevirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::protein_interface_design::movers::DesignMinimizeHbondsvirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
get_xsd_complex_type()protocols::calc_taskop_movers::DesignRepackMoverstatic
hbond_energy_threshold_protocols::protein_interface_design::movers::DesignMinimizeHbondsprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
interface_distance_cutoff_protocols::protein_interface_design::movers::DesignMinimizeHbondsprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
min_bb(core::select::residue_selector::ResidueSelectorOP min_bb)protocols::calc_taskop_movers::DesignRepackMover
min_bb(core::pose::Pose const &pose) constprotocols::calc_taskop_movers::DesignRepackMover
min_bb_protocols::calc_taskop_movers::DesignRepackMoverprivate
min_bb_set() constprotocols::calc_taskop_movers::DesignRepackMover
min_rb(utility::vector1< bool > const &min_rb)protocols::calc_taskop_movers::DesignRepackMoverinline
min_rb(bool const min_rb)protocols::calc_taskop_movers::DesignRepackMoverinline
min_rb() constprotocols::calc_taskop_movers::DesignRepackMoverinline
min_rb_protocols::calc_taskop_movers::DesignRepackMoverprotected
min_rb_set() constprotocols::calc_taskop_movers::DesignRepackMoverinline
min_rb_set_protocols::calc_taskop_movers::DesignRepackMoverprotected
min_sc(core::select::residue_selector::ResidueSelectorOP min_sc)protocols::calc_taskop_movers::DesignRepackMover
min_sc(core::pose::Pose const &pose) constprotocols::calc_taskop_movers::DesignRepackMover
min_sc_protocols::calc_taskop_movers::DesignRepackMoverprivate
min_sc_set() constprotocols::calc_taskop_movers::DesignRepackMover
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::protein_interface_design::movers::DesignMinimizeHbondsstatic
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
optimize_foldtree() constprotocols::calc_taskop_movers::DesignRepackMoverinline
optimize_foldtree(bool const opt)protocols::calc_taskop_movers::DesignRepackMoverinline
optimize_foldtree_protocols::calc_taskop_movers::DesignRepackMoverprotected
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) overrideprotocols::protein_interface_design::movers::DesignMinimizeHbondsvirtual
Pose typedefprotocols::protein_interface_design::movers::DesignMinimizeHbonds
PoseCOP typedefprotocols::moves::Mover
prevent_repacking(utility::vector1< core::Size > const &p)protocols::calc_taskop_movers::DesignRepackMoverinline
prevent_repacking() constprotocols::calc_taskop_movers::DesignRepackMoverinline
prevent_repacking_protocols::calc_taskop_movers::DesignRepackMoverprotected
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::protein_interface_design::movers::DesignMinimizeHbondsstatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
repack_non_ala_protocols::calc_taskop_movers::DesignRepackMoverprotected
repack_partner1_protocols::calc_taskop_movers::DesignRepackMoverprotected
repack_partner2_protocols::calc_taskop_movers::DesignRepackMoverprotected
reset_status()protocols::moves::Mover
restrict_to_repacking(utility::vector1< core::Size > const &p)protocols::calc_taskop_movers::DesignRepackMoverinline
restrict_to_repacking() constprotocols::calc_taskop_movers::DesignRepackMoverinline
restrict_to_repacking_protocols::calc_taskop_movers::DesignRepackMoverprotected
sc_hbond_protocols::protein_interface_design::movers::DesignMinimizeHbondsprivate
ScoreFunction typedefprotocols::protein_interface_design::movers::DesignMinimizeHbonds
ScoreFunctionCOP typedefprotocols::protein_interface_design::movers::DesignMinimizeHbonds
ScoreFunctionOP typedefprotocols::protein_interface_design::movers::DesignMinimizeHbonds
scorefxn_minimize() constprotocols::calc_taskop_movers::DesignRepackMover
scorefxn_minimize_protocols::calc_taskop_movers::DesignRepackMoverprotected
scorefxn_repack() constprotocols::calc_taskop_movers::DesignRepackMover
scorefxn_repack_protocols::calc_taskop_movers::DesignRepackMoverprotected
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_scorefxn_minimize(core::scoring::ScoreFunctionCOP scorefxn)protocols::calc_taskop_movers::DesignRepackMover
set_scorefxn_repack(core::scoring::ScoreFunctionCOP scorefxn)protocols::calc_taskop_movers::DesignRepackMover
set_type(std::string const &setting)protocols::moves::Moverinline
setup_packer_and_movemap(core::pose::Pose const &pose)protocols::calc_taskop_movers::DesignRepackMover
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
Strings typedefprotocols::moves::Mover
symmetry_protocols::calc_taskop_movers::DesignRepackMoverprotected
TagCOP typedefprotocols::moves::Mover
target_residues(core::select::residue_selector::ResidueSelectorCOP setting)protocols::calc_taskop_movers::DesignRepackMover
target_residues() constprotocols::calc_taskop_movers::DesignRepackMover
target_residues(core::pose::Pose const &pose) constprotocols::calc_taskop_movers::DesignRepackMover
target_residues_protocols::calc_taskop_movers::DesignRepackMoverprivate
task() constprotocols::calc_taskop_movers::DesignRepackMover
task()protocols::calc_taskop_movers::DesignRepackMover
task_protocols::calc_taskop_movers::DesignRepackMoverprotected
task_factory(core::pack::task::TaskFactoryOP p)protocols::calc_taskop_movers::DesignRepackMover
task_factory()protocols::calc_taskop_movers::DesignRepackMover
task_factory() constprotocols::calc_taskop_movers::DesignRepackMover
task_factory_protocols::calc_taskop_movers::DesignRepackMoverprotected
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
use_preset_task(bool const bt)protocols::calc_taskop_movers::DesignRepackMoverinline
use_preset_task() constprotocols::calc_taskop_movers::DesignRepackMoverinline
use_preset_task_protocols::calc_taskop_movers::DesignRepackMoverprotected
~DesignMinimizeHbonds() overrideprotocols::protein_interface_design::movers::DesignMinimizeHbonds
~DesignRepackMover() overrideprotocols::calc_taskop_movers::DesignRepackMover