#include <RestrictToAlignedSegments.hh>
Public Types | |
| typedef protocols::task_operations::RestrictOperationsBase | parent |
 Public Types inherited from protocols::task_operations::RestrictOperationsBase | |
| typedef core::pack::task::operation::TaskOperation | TaskOperation |
| typedef core::pack::task::operation::TaskOperationOP | TaskOperationOP |
| typedef TaskOperation | parent |
| Public Types inherited from core::pack::task::operation::TaskOperation | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef basic::datacache::DataMap | DataMap |
| typedef pose::Pose | Pose |
Public Member Functions | |
| RestrictToAlignedSegmentsOperation () | |
| ~RestrictToAlignedSegmentsOperation () override | |
| core::pack::task::operation::TaskOperationOP | clone () const override |
| Create another task operation of the type matching the most-derived version of the class. More... | |
| void | apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override |
| Change a packer task in some way. The input pose is the one to which the input task will be later applied. More... | |
| void | parse_tag (TagCOP, DataMap &) override |
| Used to parse an xml-like tag to load parameters and properties. More... | |
| utility::vector1< core::Size > | start_res () const |
| void | start_res (utility::vector1< core::Size > const &s) |
| utility::vector1< core::Size > | stop_res () const |
| void | stop_res (utility::vector1< core::Size > const &s) |
| core::Size | chain () const |
| void | chain (core::Size const c) |
| core::Real | repack_shell () const |
| void | repack_shell (core::Real const r) |
| Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase | |
| RestrictOperationsBase () | |
| ~RestrictOperationsBase () override | |
| Public Member Functions inherited from core::pack::task::operation::TaskOperation | |
| ~TaskOperation () override | |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
| static std::string | keyname () |
Private Attributes | |
| utility::vector1< std::string > | segment_names_ |
| utility::vector1< core::pose::PoseOP > | source_pose_ |
| utility::vector1< core::Size > | start_res_ |
| utility::vector1< core::Size > | stop_res_ |
| core::Size | chain_ |
| core::Real | repack_shell_ |
Additional Inherited Members | |
| Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase | |
| void | run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const |
| this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More... | |
Detailed Description
this class is a TaskOperation to prevent repacking of residues not near an interface.
Member Typedef Documentation
◆ parent
| typedef protocols::task_operations::RestrictOperationsBase protocols::task_operations::RestrictToAlignedSegmentsOperation::parent |
Constructor & Destructor Documentation
◆ RestrictToAlignedSegmentsOperation()
| protocols::task_operations::RestrictToAlignedSegmentsOperation::RestrictToAlignedSegmentsOperation | ( | ) |
◆ ~RestrictToAlignedSegmentsOperation()
|
overridedefault |
Member Function Documentation
◆ apply()
|
overridevirtual |
Change a packer task in some way. The input pose is the one to which the input task will be later applied.
Implements protocols::task_operations::RestrictOperationsBase.
References core::pack::task::operation::OperateOnCertainResidues::apply(), core::conformation::Conformation::chain_begin(), core::pose::Pose::conformation(), protocols::rosetta_scripts::find_nearest_res(), protocols::mean_field::min(), core::pack::task::operation::OperateOnCertainResidues::op(), core::pack::task::operation::OperateOnCertainResidues::residue_indices(), protocols::rosetta_scripts::residue_packer_states(), and protocols::task_operations::TR().
◆ chain() [1/2]
|
inline |
References chain_.
◆ chain() [2/2]
|
inline |
References chain_.
◆ clone()
|
overridevirtual |
Create another task operation of the type matching the most-derived version of the class.
Implements protocols::task_operations::RestrictOperationsBase.
◆ keyname()
|
static |
◆ parse_tag()
|
overridevirtual |
Used to parse an xml-like tag to load parameters and properties.
Reimplemented from core::pack::task::operation::TaskOperation.
References core::pose::parse_resnum(), core::import_pose::PDB_file, and core::import_pose::pose_from_file().
◆ provide_xml_schema()
|
static |
References core::pack::task::operation::complex_type_name_for_task_op(), and protocols::task_operations::rtas_subelement_ct_naming_function().
Referenced by protocols::task_operations::SeqprofConsensusOperation::create_complex_type_generator(), and protocols::task_operations::RestrictToAlignedSegmentsOperationCreator::provide_xml_schema().
◆ repack_shell() [1/2]
|
inline |
References repack_shell_.
◆ repack_shell() [2/2]
|
inline |
References repack_shell_.
◆ start_res() [1/2]
|
inline |
References start_res_.
◆ start_res() [2/2]
|
inline |
References start_res_.
◆ stop_res() [1/2]
|
inline |
References stop_res_.
◆ stop_res() [2/2]
|
inline |
References stop_res_.
Member Data Documentation
◆ chain_
|
private |
Referenced by chain().
◆ repack_shell_
|
private |
Referenced by repack_shell().
◆ segment_names_
|
private |
◆ source_pose_
|
private |
◆ start_res_
|
private |
Referenced by start_res().
◆ stop_res_
|
private |
Referenced by stop_res().
The documentation for this class was generated from the following files:
- src/protocols/task_operations/RestrictToAlignedSegments.hh
- src/protocols/task_operations/RestrictToAlignedSegments.cc
