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protocols::task_operations::RestrictToAlignedSegmentsOperation Class Reference

#include <RestrictToAlignedSegments.hh>

Inheritance diagram for protocols::task_operations::RestrictToAlignedSegmentsOperation:
Inheritance graph
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Public Types

typedef
protocols::task_operations::RestrictOperationsBase 
parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 RestrictToAlignedSegmentsOperation ()
 
 ~RestrictToAlignedSegmentsOperation () override
 
core::pack::task::operation::TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
utility::vector1< core::Sizestart_res () const
 
void start_res (utility::vector1< core::Size > const &s)
 
utility::vector1< core::Sizestop_res () const
 
void stop_res (utility::vector1< core::Size > const &s)
 
core::Size chain () const
 
void chain (core::Size const c)
 
core::Real repack_shell () const
 
void repack_shell (core::Real const r)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

utility::vector1< std::string > segment_names_
 
utility::vector1
< core::pose::PoseOP
source_pose_
 
utility::vector1< core::Sizestart_res_
 
utility::vector1< core::Sizestop_res_
 
core::Size chain_
 
core::Real repack_shell_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::RestrictToAlignedSegmentsOperation::RestrictToAlignedSegmentsOperation ( )
protocols::task_operations::RestrictToAlignedSegmentsOperation::~RestrictToAlignedSegmentsOperation ( )
overridedefault

Member Function Documentation

void protocols::task_operations::RestrictToAlignedSegmentsOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
core::Size protocols::task_operations::RestrictToAlignedSegmentsOperation::chain ( ) const
inline

References chain_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::chain ( core::Size const  c)
inline

References core::pack::dunbrack::c, and chain_.

core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictToAlignedSegmentsOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

std::string protocols::task_operations::RestrictToAlignedSegmentsOperation::keyname ( )
static
void protocols::task_operations::RestrictToAlignedSegmentsOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References core::pose::parse_resnum(), core::import_pose::PDB_file, and core::import_pose::pose_from_file().

void protocols::task_operations::RestrictToAlignedSegmentsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
core::Real protocols::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( ) const
inline

References repack_shell_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::repack_shell ( core::Real const  r)
inline

References repack_shell_.

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::start_res ( ) const
inline

References start_res_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::start_res ( utility::vector1< core::Size > const &  s)
inline

References start_res_.

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( ) const
inline

References stop_res_.

void protocols::task_operations::RestrictToAlignedSegmentsOperation::stop_res ( utility::vector1< core::Size > const &  s)
inline

References stop_res_.

Member Data Documentation

core::Size protocols::task_operations::RestrictToAlignedSegmentsOperation::chain_
private

Referenced by chain().

core::Real protocols::task_operations::RestrictToAlignedSegmentsOperation::repack_shell_
private

Referenced by repack_shell().

utility::vector1< std::string > protocols::task_operations::RestrictToAlignedSegmentsOperation::segment_names_
private
utility::vector1< core::pose::PoseOP > protocols::task_operations::RestrictToAlignedSegmentsOperation::source_pose_
private
utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::start_res_
private

Referenced by start_res().

utility::vector1< core::Size > protocols::task_operations::RestrictToAlignedSegmentsOperation::stop_res_
private

Referenced by stop_res().


The documentation for this class was generated from the following files: