Rosetta  2021.16
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FragmentPicker.cc File Reference

Fragment picker - the core part of picking machinery. More...

#include <protocols/frag_picker/FragmentPicker.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/VallChunkFilter.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/CandidatesCollector.hh>
#include <protocols/frag_picker/GrabAllCollector.hh>
#include <protocols/frag_picker/quota/QuotaSelector.hh>
#include <protocols/frag_picker/quota/QuotaConfig.hh>
#include <protocols/frag_picker/quota/QuotaCollector.hh>
#include <protocols/frag_picker/quota/ABEGO_SS_Config.hh>
#include <protocols/frag_picker/quota/ABEGO_SS_Pool.hh>
#include <protocols/frag_picker/quota/SecondaryStructurePool.hh>
#include <protocols/frag_picker/BoundedCollector.hh>
#include <protocols/frag_picker/PdbIdChunkFilter.hh>
#include <protocols/frag_picker/BestTotalScoreSelector.hh>
#include <protocols/frag_picker/CustomScoreSelector.hh>
#include <protocols/frag_picker/scores/FragmentScoringMethod.hh>
#include <protocols/frag_picker/scores/FragmentScoreManager.hh>
#include <protocols/frag_picker/scores/SecondarySimilarity.hh>
#include <protocols/frag_picker/scores/PartialSecondarySimilarity.hh>
#include <protocols/frag_picker/scores/ProfileScoreL1.hh>
#include <protocols/frag_picker/scores/RamaScore.hh>
#include <protocols/frag_picker/scores/CSScore.hh>
#include <protocols/frag_picker/scores/ABEGO_SS_Score.hh>
#include <protocols/frag_picker/scores/TorsionBinSimilarity.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/TorsionBinIO.hh>
#include <protocols/frag_picker/Contact.hh>
#include <protocols/frag_picker/ContactCounts.hh>
#include <protocols/frag_picker/nonlocal/NonlocalPair.hh>
#include <protocols/frag_picker/Faraggi_SA.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <core/sequence/util.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/id/SequenceMapping.hh>
#include <core/fragment/FragID.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/scoring/rms_util.hh>
#include <numeric/model_quality/rms.hh>
#include <core/fragment/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/thread_manager/RosettaThreadManager.hh>
#include <basic/thread_manager/RosettaThreadAssignmentInfo.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <utility>
#include <sstream>
#include <iostream>
#include <fstream>
#include <ObjexxFCL/format.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::frag_picker
 

Functions

static basic::Tracer protocols::frag_picker::tr ("protocols.frag_picker.FragmentPicker")
 

Detailed Description

Fragment picker - the core part of picking machinery.

Author
Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl) Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org) – Modernized multithreading support.