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Public Member Functions | Public Attributes | List of all members
protocols::stepwise::modeler::rna::sugar::SugarModeling Class Reference

#include <SugarModeling.hh>

Inheritance diagram for protocols::stepwise::modeler::rna::sugar::SugarModeling:
Inheritance graph
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Public Member Functions

 SugarModeling (core::Size const input_moving_res, core::Size const input_reference_res)
 
 SugarModeling ()
 
 ~SugarModeling () override
 
void check_compatibility (core::Size const nres) const
 
void set_base_and_pucker_state (core::pose::Pose const &pose, working_parameters::StepWiseWorkingParametersCOP const &WP)
 

Public Attributes

bool sample_sugar
 
core::Size moving_res
 
core::Size reference_res
 
bool is_prepend
 
core::Size bulge_res
 
core::Size bulge_suite
 
core::Size five_prime_chain_break
 
core::chemical::rna::PuckerState moving_res_pucker_state
 
core::chemical::rna::PuckerState bulge_res_pucker_state
 
core::chemical::rna::ChiState moving_res_base_state
 
core::chemical::rna::ChiState bulge_res_base_state
 
utility::vector1< core::pose::PoseOPpose_list
 

Constructor & Destructor Documentation

◆ SugarModeling() [1/2]

protocols::stepwise::modeler::rna::sugar::SugarModeling::SugarModeling ( core::Size const  input_moving_res,
core::Size const  input_reference_res 
)

◆ SugarModeling() [2/2]

protocols::stepwise::modeler::rna::sugar::SugarModeling::SugarModeling ( )

References pose_list.

◆ ~SugarModeling()

protocols::stepwise::modeler::rna::sugar::SugarModeling::~SugarModeling ( )
overridedefault

Member Function Documentation

◆ check_compatibility()

void protocols::stepwise::modeler::rna::sugar::SugarModeling::check_compatibility ( core::Size const  nres) const

◆ set_base_and_pucker_state()

void protocols::stepwise::modeler::rna::sugar::SugarModeling::set_base_and_pucker_state ( core::pose::Pose const &  pose,
working_parameters::StepWiseWorkingParametersCOP const &  WP 
)

Member Data Documentation

◆ bulge_res

core::Size protocols::stepwise::modeler::rna::sugar::SugarModeling::bulge_res

◆ bulge_res_base_state

core::chemical::rna::ChiState protocols::stepwise::modeler::rna::sugar::SugarModeling::bulge_res_base_state

◆ bulge_res_pucker_state

core::chemical::rna::PuckerState protocols::stepwise::modeler::rna::sugar::SugarModeling::bulge_res_pucker_state

◆ bulge_suite

core::Size protocols::stepwise::modeler::rna::sugar::SugarModeling::bulge_suite

◆ five_prime_chain_break

core::Size protocols::stepwise::modeler::rna::sugar::SugarModeling::five_prime_chain_break

◆ is_prepend

bool protocols::stepwise::modeler::rna::sugar::SugarModeling::is_prepend

◆ moving_res

core::Size protocols::stepwise::modeler::rna::sugar::SugarModeling::moving_res

◆ moving_res_base_state

core::chemical::rna::ChiState protocols::stepwise::modeler::rna::sugar::SugarModeling::moving_res_base_state

◆ moving_res_pucker_state

core::chemical::rna::PuckerState protocols::stepwise::modeler::rna::sugar::SugarModeling::moving_res_pucker_state

◆ pose_list

utility::vector1< core::pose::PoseOP > protocols::stepwise::modeler::rna::sugar::SugarModeling::pose_list

◆ reference_res

core::Size protocols::stepwise::modeler::rna::sugar::SugarModeling::reference_res

◆ sample_sugar

bool protocols::stepwise::modeler::rna::sugar::SugarModeling::sample_sugar

The documentation for this class was generated from the following files: