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AqueousPoreFinder.cc File Reference

Compute the center, major radius and minor radius of an ellipsoidal aqueous pore. More...

#include <protocols/membrane/AqueousPoreFinder.hh>
#include <protocols/membrane/AqueousPoreFinderCreator.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/ImplicitLipidInfo.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/conformation/membrane/AqueousPoreParameters.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/chemical/AA.hh>
#include <numeric/MathMatrix.hh>
#include <numeric/xyzVector.hh>
#include <numeric/linear_algebra/minimum_bounding_ellipse.hh>
#include <numeric/linear_algebra/EllipseParameters.hh>
#include <numeric/interpolation/spline/SplineGenerator.hh>
#include <numeric/interpolation/spline/SimpleInterpolator.hh>
#include <numeric/cubic_polynomial.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <utility/vector1.functions.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <ostream>
#include <fstream>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::membrane
 

Typedefs

typedef utility::vector1
< numeric::CubicPolynomial > 
piecewise_poly
 

Functions

static basic::Tracer TR ("protocols.membrane.AqueousPoreFinder")
 
std::ostream & protocols::membrane::operator<< (std::ostream &os, AqueousPoreFinder const &mover)
 

Detailed Description

Compute the center, major radius and minor radius of an ellipsoidal aqueous pore.

Author
Rebecca Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Typedef Documentation

typedef utility::vector1< numeric::CubicPolynomial > piecewise_poly

Function Documentation

static basic::Tracer TR ( "protocols.membrane.AqueousPoreFinder"  )
static