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protocols::flexpack::interaction_graph::FlexbbNode Class Reference

#include <FlexbbInteractionGraph.hh>

Inheritance diagram for protocols::flexpack::interaction_graph::FlexbbNode:
Inheritance graph
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Public Types

typedef
core::pack::interaction_graph::NodeBase 
parent
 
typedef core::PackerEnergy PackerEnergy
 
typedef core::Size Size
 

Public Member Functions

 FlexbbNode (FlexbbInteractionGraph *owner, int node_id, int num_states)
 
 ~FlexbbNode () override
 
void print () const override
 
void set_num_distinct_backbones (int nbbconfs)
 
int get_num_distinct_backbones () const
 
void set_num_states_per_backbone (utility::vector1< int > const &)
 
int get_bb_for_state (int state) const
 
int get_num_states_for_bb (int bbconf) const
 
int get_state_offset_for_bb (int bbconf) const
 
void get_states_on_curr_bb (utility::vector1< core::Size > &state_list, int offset) const
 
void get_all_states (utility::vector1< core::Size > &rotlist, int offset) const
 
void set_closest_states_on_other_bbs (ObjexxFCL::FArray2D_int const &)
 
void set_amino_acid_types (utility::vector1< int > const &)
 
ObjexxFCL::FArray1A_int getNumStatesPerAAPerBB (int aa)
 
void add_to_one_body_energies (ObjexxFCL::FArray1< PackerEnergy > &energies) override
 
void add_to_one_body_energy (int state, PackerEnergy energy) override
 
void update_one_body_energy (int state, PackerEnergy energy) override
 
void zero_one_body_energies () override
 
bool state_unassigned () const override
 
PackerEnergy get_one_body_energy (int state) const
 
void prepare_for_simulated_annealing () override
 
int get_current_state () const
 
int get_backbone_for_current_state () const
 
void write_current_state_to_state_array (ObjexxFCL::FArray1_int &nodes_states)
 
bool inform_edges_of_alt_state_before_bbjump ()
 Preliminatry bookkeeping for the node the Graph contacted about a backbone move. This node is the "root" of the DFS traversal. More...
 
bool state_has_same_backbone_as_current (int state) const
 Did the alterenate state assigned during a flexbb move actually preserve the currently assigned bb? More...
 
int get_num_states_for_aa_type_for_bb (int aa_type, int bb) const
 
void print_internal_energies ()
 
void update_internal_energy_sums ()
 
unsigned int count_dynamic_memory () const override
 memory accounting scheme More...
 
int num_aa_types () const
 Read access to private data to both derived classes and the world. More...
 
int num_bbconfs () const
 
utility::vector1< int > const & num_states_for_bb ()
 
utility::vector1< int > const & state_offsets_for_bb ()
 
ObjexxFCL::FArray2D_int const & num_states_for_aa_for_bb ()
 
ObjexxFCL::FArray2D_int const & state_offsets_for_aa_for_bb ()
 
ObjexxFCL::FArray2D_int const & closest_state_on_alt_bb () const
 
FlexbbSparseMatrixIndex const & state_info (int state) const
 
utility::vector1< PackerEnergy >
const & 
one_body_energies () const
 
int current_state () const
 
FlexbbSparseMatrixIndex const & current_state_info () const
 
int curr_bb () const
 
PackerEnergy curr_state_one_body_energy () const
 
PackerEnergy curr_state_total_energy () const
 
utility::vector1< PackerEnergy >
const & 
curr_state_two_body_energies ()
 
int alternate_state () const
 
FlexbbSparseMatrixIndex const & alternate_state_info () const
 
int alt_bb () const
 
PackerEnergy alternate_state_one_body_energy () const
 
PackerEnergy alternate_state_total_energy () const
 
utility::vector1< PackerEnergy >
const & 
alternate_state_two_body_energies () const
 
PackerEnergy alternate_state_two_body_energies (int ind) const
 
utility::vector1< bool > const & edge_connects_flexsegmate () const
 
bool count_energy_to_node_in_my_fragtotalE (int edge_index) const
 Convention for acumulating energies between flexsegmates during a backbone move: The smaller-indexed node counts the interaction, the larger-indexed node does not. More...
 
bool alternate_state_is_being_considered () const
 
- Public Member Functions inherited from core::pack::interaction_graph::NodeBase
virtual ~NodeBase ()
 virtual destructor More...
 
 NodeBase (InteractionGraphBase *, int node_id, int num_states)
 Main constructor, no default constructor nor copy constructor. More...
 
int get_num_states () const
 returns the number of states for this node More...
 
std::list< EdgeBase * >::iterator add_edge (EdgeBase *edge_ptr)
 adds edge pointer to edge list; returns an iterator to the new list element More...
 
void drop_edge (std::list< EdgeBase * >::iterator edge_iterator)
 removes an edge iterator from the node's edge list More...
 
void drop_all_edges ()
 deletes all edges incident upon this node More...
 
EdgeBasefind_edge (int other_node_index) const
 a slow (linear) search for an edge. The edge is identified by the index of the node to which the edge connects this node. Returns NULL when there is no such connecting edge. More...
 
virtual void assign_zero_state ()=0
 
virtual void add_to_one_body_energies (ObjexxFCL::FArray1< core::PackerEnergy > &energy1b)=0
 
void depth_first_connected_component_counting ()
 performs a depth first traversal of the graph. Each node informs the graph that the traversal resulted in arriving at the node. More...
 
virtual unsigned int count_static_memory () const =0
 
std::list< EdgeBase * >
::const_iterator 
edge_list_begin ()
 
std::list< EdgeBase * >
::const_iterator 
edge_list_end ()
 
int get_node_index () const
 
int get_num_incident_edges () const
 
int get_num_edges_to_smaller_indexed_nodes () const
 
int get_num_edges_to_larger_indexed_nodes () const
 
EdgeBase const * get_incident_edge (int index) const
 These functions are public for the sake of writing good unit tests. More...
 
EdgeBaseget_incident_edge (int index)
 
int get_index_of_adjacent_node (int index) const
 
NodeBase const * get_adjacent_node (int index) const
 
NodeBaseget_adjacent_node (int index)
 

Protected Member Functions

FlexbbEdge const * get_incident_flexbb_edge (int index) const
 
FlexbbEdgeget_incident_flexbb_edge (int index)
 
FlexbbNode const * get_adjacent_flexbb_node (int index) const
 
FlexbbNodeget_adjacent_flexbb_node (int index)
 
FlexbbInteractionGraph const * get_flexbbig_owner () const
 
FlexbbInteractionGraphget_flexbbig_owner ()
 
void update_internal_vectors ()
 
void inform_edges_considered_fixedbb_substition_uncommitted ()
 
void set_considering_alternate_state ()
 Limited write acces to private data. More...
 
void set_current_state (int setting)
 
void set_curr_state_one_body_energy (PackerEnergy setting)
 
void set_curr_state_total_energy (PackerEnergy setting)
 
void inc_curr_state_total_energy (PackerEnergy setting)
 
void set_curr_state_two_body_energies (core::Size index, PackerEnergy setting)
 
void set_alternate_state (int setting)
 
void set_alternate_state_one_body_energy (PackerEnergy setting)
 
void set_alternate_state_total_energy (PackerEnergy setting)
 
void inc_alternate_state_total_energy (PackerEnergy setting)
 
void set_alternate_state_two_body_energies (core::Size index, PackerEnergy setting)
 
void reset_all_rotamer_substitution_bookkeeping_data ()
 
void partial_state_assignment (int new_state)
 
void inform_incident_edges_about_partial_state_assignment ()
 
void copy_alternate_to_current ()
 bookkeeping for DFS traversal. Derived classes should consult this at the beginning of node "get_energies" traversals. Calling this function for a node effectively declares that the code which follows will project the delta energy: after the first time this functio is called, it will return true. Must be proceeded by a call to prepare_for_bb_jump(). Depricated. bool energies_already_projected() const; More...
 
void have_edges_copy_alternate_to_current ()
 Have all incident edges copy their data from "alternate_*" to "current_*". More...
 
void have_edges_copy_alternate_to_current_following_flexbb_accept ()
 Have a subset of the incident edges copy their data from "alternate_*" to "current_*" where this subset includes all edges to non-flexsegmates as well as all all upper edges to flexsegmates. Threadsafe if it can be fruitfully parallelized. More...
 
- Protected Member Functions inherited from core::pack::interaction_graph::NodeBase
void update_edge_vector ()
 converts edge-list to edge-vector representation More...
 
bool get_edge_vector_up_to_date () const
 
InteractionGraphBase const * get_owner () const
 
InteractionGraphBaseget_owner ()
 

Private Member Functions

 FlexbbNode ()
 
 FlexbbNode (FlexbbNode const &)
 

Private Attributes

int num_aa_types_
 
int num_bb_
 
utility::vector1< int > num_states_for_bb_
 
utility::vector1< int > state_offsets_for_bb_
 
ObjexxFCL::FArray2D_int num_states_for_aa_for_bb_
 
ObjexxFCL::FArray2D_int state_offsets_for_aa_for_bb_
 
ObjexxFCL::FArray2D_int closest_state_on_alt_bb_
 
utility::vector0
< FlexbbSparseMatrixIndex
state_info_
 vector0 so that assigning state 0 does not index out-of-bounds. More...
 
utility::vector1< PackerEnergyone_body_energies_
 
int current_state_
 
FlexbbSparseMatrixIndex current_state_info_
 
PackerEnergy curr_state_one_body_energy_
 
PackerEnergy curr_state_total_energy_
 
utility::vector1< PackerEnergycurr_state_two_body_energies_
 
int alternate_state_
 
FlexbbSparseMatrixIndex alternate_state_info_
 
PackerEnergy alternate_state_one_body_energy_
 
PackerEnergy alternate_state_total_energy_
 
utility::vector1< PackerEnergyalternate_state_two_body_energies_
 
utility::vector1< booledge_connects_flexsegmate_
 
bool alternate_state_is_being_considered_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::flexpack::interaction_graph::FlexbbNode::FlexbbNode ( FlexbbInteractionGraph owner,
int  node_id,
int  num_states 
)
protocols::flexpack::interaction_graph::FlexbbNode::~FlexbbNode ( )
overridedefault
protocols::flexpack::interaction_graph::FlexbbNode::FlexbbNode ( )
private
protocols::flexpack::interaction_graph::FlexbbNode::FlexbbNode ( FlexbbNode const &  )
private

Member Function Documentation

void protocols::flexpack::interaction_graph::FlexbbNode::add_to_one_body_energies ( ObjexxFCL::FArray1< PackerEnergy > &  energies)
override

References one_body_energies_.

void protocols::flexpack::interaction_graph::FlexbbNode::add_to_one_body_energy ( int  state,
PackerEnergy  energy 
)
overridevirtual
int protocols::flexpack::interaction_graph::FlexbbNode::alt_bb ( ) const
inline
int protocols::flexpack::interaction_graph::FlexbbNode::alternate_state ( ) const
inline
FlexbbSparseMatrixIndex const& protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_info ( ) const
inline
bool protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_is_being_considered ( ) const
inline
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_one_body_energy ( ) const
inline
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_total_energy ( ) const
inline
utility::vector1< PackerEnergy > const& protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_two_body_energies ( ) const
inline
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_two_body_energies ( int  ind) const
inline
ObjexxFCL::FArray2D_int const& protocols::flexpack::interaction_graph::FlexbbNode::closest_state_on_alt_bb ( ) const
inline
void protocols::flexpack::interaction_graph::FlexbbNode::copy_alternate_to_current ( )
protected

bookkeeping for DFS traversal. Derived classes should consult this at the beginning of node "get_energies" traversals. Calling this function for a node effectively declares that the code which follows will project the delta energy: after the first time this functio is called, it will return true. Must be proceeded by a call to prepare_for_bb_jump(). Depricated. bool energies_already_projected() const;

Copy over the energy data local to this node from "alternate_*" to "current_*"

References alternate_state_, alternate_state_info_, alternate_state_is_being_considered_, alternate_state_one_body_energy_, alternate_state_total_energy_, alternate_state_two_body_energies_, curr_state_one_body_energy_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, and current_state_info_.

Referenced by protocols::flexpack::interaction_graph::MinimalistFlexbbNode::commit_alt_bb_substitution(), protocols::flexpack::interaction_graph::MinimalistFlexbbNode::commit_considered_substitution(), and protocols::flexpack::interaction_graph::MinimalistFlexbbNode::complete_partial_state_assignment().

unsigned int protocols::flexpack::interaction_graph::FlexbbNode::count_dynamic_memory ( ) const
overridevirtual
bool protocols::flexpack::interaction_graph::FlexbbNode::count_energy_to_node_in_my_fragtotalE ( int  edge_index) const
inline

Convention for acumulating energies between flexsegmates during a backbone move: The smaller-indexed node counts the interaction, the larger-indexed node does not.

References core::pack::interaction_graph::NodeBase::get_num_edges_to_smaller_indexed_nodes().

int protocols::flexpack::interaction_graph::FlexbbNode::curr_bb ( ) const
inline
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::curr_state_one_body_energy ( ) const
inline
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::curr_state_total_energy ( ) const
inline
utility::vector1< PackerEnergy > const& protocols::flexpack::interaction_graph::FlexbbNode::curr_state_two_body_energies ( )
inline
int protocols::flexpack::interaction_graph::FlexbbNode::current_state ( ) const
inline
FlexbbSparseMatrixIndex const& protocols::flexpack::interaction_graph::FlexbbNode::current_state_info ( ) const
inline

References current_state_info_.

utility::vector1< bool > const& protocols::flexpack::interaction_graph::FlexbbNode::edge_connects_flexsegmate ( ) const
inline
FlexbbNode const * protocols::flexpack::interaction_graph::FlexbbNode::get_adjacent_flexbb_node ( int  index) const
inlineprotected
FlexbbNode * protocols::flexpack::interaction_graph::FlexbbNode::get_adjacent_flexbb_node ( int  index)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::get_all_states ( utility::vector1< core::Size > &  rotlist,
int  offset 
) const
int protocols::flexpack::interaction_graph::FlexbbNode::get_backbone_for_current_state ( ) const
int protocols::flexpack::interaction_graph::FlexbbNode::get_bb_for_state ( int  state) const
inline
int protocols::flexpack::interaction_graph::FlexbbNode::get_current_state ( ) const
FlexbbInteractionGraph const * protocols::flexpack::interaction_graph::FlexbbNode::get_flexbbig_owner ( ) const
inlineprotected
FlexbbInteractionGraph * protocols::flexpack::interaction_graph::FlexbbNode::get_flexbbig_owner ( )
inlineprotected
FlexbbEdge const * protocols::flexpack::interaction_graph::FlexbbNode::get_incident_flexbb_edge ( int  index) const
inlineprotected
FlexbbEdge * protocols::flexpack::interaction_graph::FlexbbNode::get_incident_flexbb_edge ( int  index)
inlineprotected
int protocols::flexpack::interaction_graph::FlexbbNode::get_num_distinct_backbones ( ) const
inline
int protocols::flexpack::interaction_graph::FlexbbNode::get_num_states_for_aa_type_for_bb ( int  aa_type,
int  bb 
) const

In a bbmove, did the backbone actually move? Should be called only by the node who was initially contacted

References num_states_for_aa_for_bb_.

int protocols::flexpack::interaction_graph::FlexbbNode::get_num_states_for_bb ( int  bbconf) const
FlexbbNode::PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::get_one_body_energy ( int  state) const
int protocols::flexpack::interaction_graph::FlexbbNode::get_state_offset_for_bb ( int  bbconf) const

References state_offsets_for_bb_.

void protocols::flexpack::interaction_graph::FlexbbNode::get_states_on_curr_bb ( utility::vector1< core::Size > &  state_list,
int  offset 
) const
FArray1A_int protocols::flexpack::interaction_graph::FlexbbNode::getNumStatesPerAAPerBB ( int  aa)
void protocols::flexpack::interaction_graph::FlexbbNode::have_edges_copy_alternate_to_current ( )
protected
void protocols::flexpack::interaction_graph::FlexbbNode::have_edges_copy_alternate_to_current_following_flexbb_accept ( )
protected

Have a subset of the incident edges copy their data from "alternate_*" to "current_*" where this subset includes all edges to non-flexsegmates as well as all all upper edges to flexsegmates. Threadsafe if it can be fruitfully parallelized.

References edge_connects_flexsegmate(), get_incident_flexbb_edge(), core::pack::interaction_graph::NodeBase::get_index_of_adjacent_node(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and protocols::flexpack::interaction_graph::FlexbbEdge::note_state_substitution_accepted().

Referenced by protocols::flexpack::interaction_graph::MinimalistFlexbbNode::commit_alt_bb_substitution().

void protocols::flexpack::interaction_graph::FlexbbNode::inc_alternate_state_total_energy ( PackerEnergy  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::inc_curr_state_total_energy ( PackerEnergy  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::inform_edges_considered_fixedbb_substition_uncommitted ( )
protected
bool protocols::flexpack::interaction_graph::FlexbbNode::inform_edges_of_alt_state_before_bbjump ( )

Preliminatry bookkeeping for the node the Graph contacted about a backbone move. This node is the "root" of the DFS traversal.

Preliminary bookkeeping for DFS-backbone-motion inducing state substitution initiated by a separate node. Returns false if the current state is unassigned.

Edges must be informed of the alternate state for both of their nodes; this should happen before any edge is asked for an alternate-state energy.

References alternate_state_, alternate_state_info_, alternate_state_is_being_considered_, current_state_, get_flexbbig_owner(), get_incident_flexbb_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), protocols::flexpack::interaction_graph::FlexbbInteractionGraph::increment_count_nodes_in_flexseg(), and protocols::flexpack::interaction_graph::FlexbbEdge::set_alt_state().

Referenced by protocols::flexpack::interaction_graph::MinimalistFlexbbNode::prepare_for_altbb_move_to_state().

void protocols::flexpack::interaction_graph::FlexbbNode::inform_incident_edges_about_partial_state_assignment ( )
protected
int protocols::flexpack::interaction_graph::FlexbbNode::num_aa_types ( ) const
inline

Read access to private data to both derived classes and the world.

References num_aa_types_.

Referenced by protocols::flexpack::interaction_graph::OTFFlexbbNode::declare_all_rotamers_initialized().

int protocols::flexpack::interaction_graph::FlexbbNode::num_bbconfs ( ) const
inline

References num_bb_.

ObjexxFCL::FArray2D_int const& protocols::flexpack::interaction_graph::FlexbbNode::num_states_for_aa_for_bb ( )
inline
utility::vector1< int > const& protocols::flexpack::interaction_graph::FlexbbNode::num_states_for_bb ( )
inline
utility::vector1< PackerEnergy > const& protocols::flexpack::interaction_graph::FlexbbNode::one_body_energies ( ) const
inline
void protocols::flexpack::interaction_graph::FlexbbNode::partial_state_assignment ( int  new_state)
protected
void protocols::flexpack::interaction_graph::FlexbbNode::prepare_for_simulated_annealing ( )
overridevirtual
void protocols::flexpack::interaction_graph::FlexbbNode::print ( ) const
overridevirtual
void protocols::flexpack::interaction_graph::FlexbbNode::print_internal_energies ( )
void protocols::flexpack::interaction_graph::FlexbbNode::reset_all_rotamer_substitution_bookkeeping_data ( )
protected
void protocols::flexpack::interaction_graph::FlexbbNode::set_alternate_state ( int  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_alternate_state_one_body_energy ( PackerEnergy  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_alternate_state_total_energy ( PackerEnergy  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_alternate_state_two_body_energies ( core::Size  index,
PackerEnergy  setting 
)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_amino_acid_types ( utility::vector1< int > const &  aatypes)
void protocols::flexpack::interaction_graph::FlexbbNode::set_closest_states_on_other_bbs ( ObjexxFCL::FArray2D_int const &  closest_state_on_alt_bb)
void protocols::flexpack::interaction_graph::FlexbbNode::set_considering_alternate_state ( )
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_curr_state_one_body_energy ( PackerEnergy  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_curr_state_total_energy ( PackerEnergy  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_curr_state_two_body_energies ( core::Size  index,
PackerEnergy  setting 
)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_current_state ( int  setting)
inlineprotected
void protocols::flexpack::interaction_graph::FlexbbNode::set_num_distinct_backbones ( int  nbbconfs)
void protocols::flexpack::interaction_graph::FlexbbNode::set_num_states_per_backbone ( utility::vector1< int > const &  num_states_for_bb)
bool protocols::flexpack::interaction_graph::FlexbbNode::state_has_same_backbone_as_current ( int  state) const
inline

Did the alterenate state assigned during a flexbb move actually preserve the currently assigned bb?

References current_state_info_, protocols::flexpack::interaction_graph::FlexbbSparseMatrixIndex::get_bb(), and state_info_.

FlexbbSparseMatrixIndex const& protocols::flexpack::interaction_graph::FlexbbNode::state_info ( int  state) const
inline
ObjexxFCL::FArray2D_int const& protocols::flexpack::interaction_graph::FlexbbNode::state_offsets_for_aa_for_bb ( )
inline
utility::vector1< int > const& protocols::flexpack::interaction_graph::FlexbbNode::state_offsets_for_bb ( )
inline
bool protocols::flexpack::interaction_graph::FlexbbNode::state_unassigned ( ) const
overridevirtual
void protocols::flexpack::interaction_graph::FlexbbNode::update_internal_energy_sums ( )

Numerical noise creeps in to the total_energy as energies are added and subtracted due to neighbors accepting rotamer substitutions.

References curr_state_one_body_energy_, curr_state_total_energy_, curr_state_two_body_energies_, and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

Referenced by protocols::flexpack::interaction_graph::FlexbbInteractionGraph::update_internal_energy_totals().

void protocols::flexpack::interaction_graph::FlexbbNode::update_internal_vectors ( )
protected
void protocols::flexpack::interaction_graph::FlexbbNode::update_one_body_energy ( int  state,
PackerEnergy  energy 
)
overridevirtual

Setter. This function is not called anywhere and should be removed...

Implements core::pack::interaction_graph::NodeBase.

References protocols::buns::energy, and one_body_energies_.

void protocols::flexpack::interaction_graph::FlexbbNode::write_current_state_to_state_array ( ObjexxFCL::FArray1_int &  nodes_states)
void protocols::flexpack::interaction_graph::FlexbbNode::zero_one_body_energies ( )
overridevirtual

Member Data Documentation

int protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_
private
FlexbbSparseMatrixIndex protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_info_
private
bool protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_is_being_considered_
private
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_one_body_energy_
private
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_total_energy_
private
utility::vector1< PackerEnergy > protocols::flexpack::interaction_graph::FlexbbNode::alternate_state_two_body_energies_
private
ObjexxFCL::FArray2D_int protocols::flexpack::interaction_graph::FlexbbNode::closest_state_on_alt_bb_
private
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::curr_state_one_body_energy_
private
PackerEnergy protocols::flexpack::interaction_graph::FlexbbNode::curr_state_total_energy_
private
utility::vector1< PackerEnergy > protocols::flexpack::interaction_graph::FlexbbNode::curr_state_two_body_energies_
private
int protocols::flexpack::interaction_graph::FlexbbNode::current_state_
private
FlexbbSparseMatrixIndex protocols::flexpack::interaction_graph::FlexbbNode::current_state_info_
private
utility::vector1< bool > protocols::flexpack::interaction_graph::FlexbbNode::edge_connects_flexsegmate_
private
int protocols::flexpack::interaction_graph::FlexbbNode::num_aa_types_
private
int protocols::flexpack::interaction_graph::FlexbbNode::num_bb_
private
ObjexxFCL::FArray2D_int protocols::flexpack::interaction_graph::FlexbbNode::num_states_for_aa_for_bb_
private
utility::vector1< int > protocols::flexpack::interaction_graph::FlexbbNode::num_states_for_bb_
private
utility::vector1< PackerEnergy > protocols::flexpack::interaction_graph::FlexbbNode::one_body_energies_
private
utility::vector0< FlexbbSparseMatrixIndex > protocols::flexpack::interaction_graph::FlexbbNode::state_info_
private
ObjexxFCL::FArray2D_int protocols::flexpack::interaction_graph::FlexbbNode::state_offsets_for_aa_for_bb_
private
utility::vector1< int > protocols::flexpack::interaction_graph::FlexbbNode::state_offsets_for_bb_
private

The documentation for this class was generated from the following files: