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protocols::denovo_design::architects::PoseArchitect Class Reference

Design segments based on a pose. More...

#include <PoseArchitect.hh>

Inheritance diagram for protocols::denovo_design::architects::PoseArchitect:
Inheritance graph
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Public Member Functions

 PoseArchitect (std::string const &id_value)
 
 ~PoseArchitect () override
 
DeNovoArchitectOP clone () const override
 
std::string type () const override
 simply returns the name of this type of architect More...
 
components::StructureDataOP design (core::pose::Pose const &pose, core::Real &random) const override
 
void set_residue_selector (core::select::residue_selector::ResidueSelectorCOP selector)
 Sets the residue selector to be used to select Pose residues. More...
 
void set_secstruct (std::string const &secstruct)
 Sets the secondary structure to be used for the pose. More...
 
void set_add_padding (bool const pad)
 Sets whether a one-residue "padding" will be added. More...
 
- Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
 DeNovoArchitect (std::string const &id)
 
 ~DeNovoArchitect () override
 
components::StructureDataOP apply (core::pose::Pose const &pose) const
 
- Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
 StructureArchitect (std::string const &id)
 
 ~StructureArchitect () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data)
 
std::string const & id () const
 
void set_id (std::string const &new_id)
 

Static Public Member Functions

static std::string architect_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
- Static Public Member Functions inherited from protocols::denovo_design::architects::DeNovoArchitect
static void add_common_denovo_architect_attributes (utility::tag::AttributeList &attlist)
 
- Static Public Member Functions inherited from protocols::denovo_design::architects::StructureArchitect
static void attributes_for_parse_my_tag (utility::tag::AttributeList &attlist)
 

Protected Member Functions

void parse_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
 Configuration by XML. More...
 

Private Attributes

core::select::residue_selector::ResidueSelectorCOP selector_
 selects which residues to add More...
 
std::string secstruct_
 If set, this secondary structure will be used to override what is in the input pose. More...
 
bool add_padding_
 if true, a one-residue "pad" will be added to the beginning and end of each chain if false, the pad will not be added More...
 

Additional Inherited Members

- Public Types inherited from protocols::denovo_design::architects::DeNovoArchitect
typedef components::StructureDataOP StructureDataOP
 
- Static Public Attributes inherited from protocols::denovo_design::architects::DeNovoArchitect
static std::string const DATA_MAP_NAME = "DeNovoArchitects"
 

Detailed Description

Design segments based on a pose.

Constructor & Destructor Documentation

protocols::denovo_design::architects::PoseArchitect::PoseArchitect ( std::string const &  id_value)
protocols::denovo_design::architects::PoseArchitect::~PoseArchitect ( )
overridedefault

Member Function Documentation

static std::string protocols::denovo_design::architects::PoseArchitect::architect_name ( )
inlinestatic
DeNovoArchitectOP protocols::denovo_design::architects::PoseArchitect::clone ( ) const
overridevirtual
components::StructureDataOP protocols::denovo_design::architects::PoseArchitect::design ( core::pose::Pose const &  pose,
core::Real random 
) const
overridevirtual
void protocols::denovo_design::architects::PoseArchitect::parse_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 
)
overrideprotectedvirtual
void protocols::denovo_design::architects::PoseArchitect::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::denovo_design::architects::PoseArchitect::set_add_padding ( bool const  pad)
inline

Sets whether a one-residue "padding" will be added.

References add_padding_.

Referenced by parse_tag().

void protocols::denovo_design::architects::PoseArchitect::set_residue_selector ( core::select::residue_selector::ResidueSelectorCOP  selector)

Sets the residue selector to be used to select Pose residues.

Does not clone the residue selector; the ResidueSelectorCOP is stored.

References selector_.

Referenced by parse_tag().

void protocols::denovo_design::architects::PoseArchitect::set_secstruct ( std::string const &  secstruct)
inline

Sets the secondary structure to be used for the pose.

References secstruct_.

Referenced by parse_tag().

std::string protocols::denovo_design::architects::PoseArchitect::type ( ) const
overridevirtual

simply returns the name of this type of architect

Implements protocols::denovo_design::architects::DeNovoArchitect.

References architect_name().

Member Data Documentation

bool protocols::denovo_design::architects::PoseArchitect::add_padding_
private

if true, a one-residue "pad" will be added to the beginning and end of each chain if false, the pad will not be added

Referenced by design(), parse_tag(), and set_add_padding().

std::string protocols::denovo_design::architects::PoseArchitect::secstruct_
private

If set, this secondary structure will be used to override what is in the input pose.

Referenced by design(), parse_tag(), and set_secstruct().

core::select::residue_selector::ResidueSelectorCOP protocols::denovo_design::architects::PoseArchitect::selector_
private

selects which residues to add

Referenced by design(), and set_residue_selector().


The documentation for this class was generated from the following files: