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protocols::task_operations::LinkResidues Class Reference

#include <LinkResidues.hh>

Inheritance diagram for protocols::task_operations::LinkResidues:
Inheritance graph
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Public Types

typedef core::Size Size
 
typedef std::string String
 
typedef
core::pack::task::PackerTask 
PackerTask
 
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
typedef utility::tag::TagCOP TagCOP
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 LinkResidues ()
 
 ~LinkResidues () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void remap_allowed_residues_to_template (core::pose::Pose const &pose, core::pack::rotamer_set::RotamerLinksOP &links) const
 
void add_group (std::string group)
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP tag, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual bool task_operation_provides_citation_info () const
 Does this task operation provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool task_operation_is_unpublished () const
 Does this task_operation indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

utility::vector1< std::string > allGroups_
 
std::string template_group_
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::LinkResidues::LinkResidues ( )
default
protocols::task_operations::LinkResidues::~LinkResidues ( )
overridedefault

Member Function Documentation

void protocols::task_operations::LinkResidues::add_group ( std::string  group)
void protocols::task_operations::LinkResidues::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

References core::sequence::end, core::pose::get_resnum_list_ordered(), core::pack::task::PackerTask::rotamer_links(), core::pose::Pose::size(), and protocols::task_operations::TR().

core::pack::task::operation::TaskOperationOP protocols::task_operations::LinkResidues::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

static std::string protocols::task_operations::LinkResidues::keyname ( )
inlinestatic
void protocols::task_operations::LinkResidues::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References protocols::task_operations::TR().

void protocols::task_operations::LinkResidues::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::task_operations::LinkResidues::remap_allowed_residues_to_template ( core::pose::Pose const &  pose,
core::pack::rotamer_set::RotamerLinksOP links 
) const

Member Data Documentation

utility::vector1< std::string > protocols::task_operations::LinkResidues::allGroups_
private
std::string protocols::task_operations::LinkResidues::template_group_
private

The documentation for this class was generated from the following files: