#include <PairingLibrary.hh>
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| PairingLibrary () |
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void | read_from_file (std::string const &fn) |
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void | read_from_file_no_filters (std::string const &fn) |
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core::kinematics::RT | get_random_beta_sheet_jump (int const orientation, int const pleating) const |
| classic rosetta++ accessor More...
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core::kinematics::RT | get_random_tmh_jump (int const orientation, int const pos1, int const pos2) const |
| classic rosetta++ accessor More...
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void | set_tmh_jump (core::pose::Pose pose, int const jump_number, int const orientation, int const pos1, int const pos2) const |
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void | create_jump_fragments (int const orientation, int const pleating, bool bWithTorsion, core::fragment::FragDataOPs &) const override |
| puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating This creates Fragments with single JumpSRFD — PairingLibrary also stores phi/psi/omega of start and end residue use bWithTorsion = true to get FragData with BBTorsionSRFD and JumpSRFD length of single FragData is noTorsion 1 withTorsion 3 bWithTorsion = true length of single FragData is 3 start jump end More...
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core::Size | size () const |
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void | generate_jump_frags (core::scoring::dssp::PairingsList const &pairings, core::kinematics::MoveMap const &mm, bool bWithTorsion, core::fragment::FragSet &frags_accumulator) override |
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| ~BasePairingLibrary () override |
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◆ PairingTemplateList
◆ PairingTemplateMap
◆ PairingLibrary()
protocols::jumping::PairingLibrary::PairingLibrary |
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inline |
◆ create_jump_fragments()
void protocols::jumping::PairingLibrary::create_jump_fragments |
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int const |
orientation, |
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int const |
pleating, |
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bool |
bWithTorsion, |
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core::fragment::FragDataOPs & |
frags |
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overridevirtual |
◆ generate_jump_frags()
◆ get_random_beta_sheet_jump()
kinematics::RT protocols::jumping::PairingLibrary::get_random_beta_sheet_jump |
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int const |
orientation, |
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int const |
pleating |
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◆ get_random_tmh_jump()
kinematics::RT protocols::jumping::PairingLibrary::get_random_tmh_jump |
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int const |
orientation, |
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int const |
pos1, |
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int const |
pos2 |
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◆ read_from_file()
void protocols::jumping::PairingLibrary::read_from_file |
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std::string const & |
fn | ) |
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◆ read_from_file_no_filters()
void protocols::jumping::PairingLibrary::read_from_file_no_filters |
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std::string const & |
fn | ) |
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◆ set_tmh_jump()
void protocols::jumping::PairingLibrary::set_tmh_jump |
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core::pose::Pose |
pose, |
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int const |
jump_number, |
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int const |
orientation, |
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int const |
pos1, |
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int const |
pos2 |
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◆ size()
core::Size protocols::jumping::PairingLibrary::size |
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const |
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inline |
◆ num_of_pairings_
core::Size protocols::jumping::PairingLibrary::num_of_pairings_ |
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private |
◆ pairings_
The documentation for this class was generated from the following files: