Rosetta  2021.16
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Member Functions | Private Attributes | List of all members
protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser Class Reference

#include <StepWiseProteinCCD_MultiPoseCloser.hh>

Inheritance diagram for protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser:
Inheritance graph
[legend]

Public Member Functions

 StepWiseProteinCCD_MultiPoseCloser (working_parameters::StepWiseWorkingParametersCOP working_parameters, sampler::StepWiseSamplerSizedOP sampler)
 
 ~StepWiseProteinCCD_MultiPoseCloser () override
 
void apply (core::pose::Pose &pose_to_visualize) override
 Apply the minimizer to one pose. More...
 
std::string get_name () const override
 Each derived class must specify its name. The class name. More...
 
utility::vector1
< utility::vector1< core::Real >
> const & 
main_chain_torsion_sets () const
 
void set_ccd_close_res (core::Size const value)
 
void set_working_moving_res_list (utility::vector1< core::Size > const &setting)
 
void set_choose_random (bool const &setting)
 
bool choose_random () const
 
void set_num_random_samples (core::Size const &setting)
 
core::Size num_random_samples () const
 
utility::vector1
< core::id::TorsionID > const & 
which_torsions () const
 
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
 
virtual MoverOP create ()
 
MoverCOP get_self_ptr () const
 
MoverOP get_self_ptr ()
 
MoverCAP get_self_weak_ptr () const
 
MoverAP get_self_weak_ptr ()
 
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
 
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
 
virtual MoverOP clone () const
 Return a clone of the Mover object. More...
 
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
 
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
 
virtual MoverOP fresh_instance () const
 Generates a new Mover object freshly created with the default ctor. More...
 
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
 
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
 
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
 
void set_type (std::string const &setting)
 Set the 'type' string. More...
 
std::string get_type () const
 
void type (const std::string &type_in)
 Set the 'type' string. More...
 
std::string const & type () const
 Get the set 'type' string. More...
 
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
 
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
 
PoseCOP get_input_pose () const
 
PoseCOP get_native_pose () const
 
virtual void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
 
void set_current_job (protocols::jobdist::BasicJobCOP job)
 
jobdist::BasicJobCOP get_current_job () const
 
virtual void set_current_tag (std::string const &new_tag)
 
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
 
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
 
virtual core::Real last_proposal_density_ratio ()
 
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
 
virtual Stringsinfo ()
 non-const accessor More...
 
virtual Strings const & info () const
 const accessor More...
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Private Attributes

StepWiseProteinCCD_CloserOP ccd_closer_
 
sampler::StepWiseSamplerSizedOP sampler_
 
utility::vector1
< utility::vector1< core::Real > > 
main_chain_torsion_sets_
 
bool choose_random_
 
core::Size num_random_samples_
 
core::Size max_ntries_
 
core::Size ccd_close_res_
 
utility::vector1< core::Sizemoving_residues_
 

Additional Inherited Members

- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
 
typedef core::pose::Pose Pose
 
typedef core::pose::PoseCOP PoseCOP
 
typedef std::list< std::string > Strings
 
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
 
static void register_options ()
 Overload this static method if you access options within the mover. More...
 
- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...
 

Constructor & Destructor Documentation

protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::StepWiseProteinCCD_MultiPoseCloser ( working_parameters::StepWiseWorkingParametersCOP  working_parameters,
sampler::StepWiseSamplerSizedOP  sampler 
)
protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::~StepWiseProteinCCD_MultiPoseCloser ( )
overridedefault

Member Function Documentation

void protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::apply ( core::pose::Pose pose_to_visualize)
overridevirtual
bool protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::choose_random ( ) const
inline

References choose_random_.

std::string protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::get_name ( ) const
inlineoverridevirtual

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

utility::vector1< utility::vector1< core::Real > > const & protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::main_chain_torsion_sets ( ) const
core::Size protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::num_random_samples ( ) const
inline

References num_random_samples_.

void protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::set_ccd_close_res ( core::Size const  value)
inline

References ccd_close_res_.

void protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::set_choose_random ( bool const &  setting)
inline

References choose_random_.

void protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::set_num_random_samples ( core::Size const &  setting)
inline

References num_random_samples_.

void protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::set_working_moving_res_list ( utility::vector1< core::Size > const &  setting)
inline

References moving_residues_.

utility::vector1< id::TorsionID > const & protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::which_torsions ( ) const

References ccd_closer_.

Member Data Documentation

core::Size protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::ccd_close_res_
private

Referenced by apply(), and set_ccd_close_res().

StepWiseProteinCCD_CloserOP protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::ccd_closer_
private

Referenced by apply(), and which_torsions().

bool protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::choose_random_
private
utility::vector1< utility::vector1< core::Real > > protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::main_chain_torsion_sets_
private

Referenced by apply(), and main_chain_torsion_sets().

core::Size protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::max_ntries_
private

Referenced by apply().

utility::vector1< core::Size > protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::moving_residues_
private
core::Size protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::num_random_samples_
private
sampler::StepWiseSamplerSizedOP protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser::sampler_
private

Referenced by apply().


The documentation for this class was generated from the following files: