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WriteToFileFromSandwichFeatures.cc File Reference

Write to a file after SandwichFeatures. More...

#include <protocols/features/strand_assembly/WriteToFileFromSandwichFeatures.hh>
#include <fstream>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::features
 
 protocols::features::strand_assembly
 

Functions

static basic::Tracer protocols::features::strand_assembly::TR ("protocols.features.strand_assembly.WriteToFileFromSandwichFeatures")
 
utility::vector1< core::Sizeprotocols::features::strand_assembly::get_vector_of_loop_AA_distribution (StructureID struct_id, sessionOP db_session, string loop_kind)
 
core::Size protocols::features::strand_assembly::prepare_and_write_number_of_electrostatic_interactions_of_residues_to_files (string tag, StructureID struct_id, sessionOP db_session, Pose const &pose, utility::vector1< SandwichFragment > bs_of_sw_can_by_sh, Real distance_cutoff_for_electrostatic_interactions_, Real CB_b_factor_cutoff_for_electrostatic_interactions_, core::Size min_primary_seq_distance_diff_for_electrostatic_interactions_, bool write_electrostatic_interactions_of_surface_residues_in_a_strand_, bool write_electrostatic_interactions_of_all_residues_in_a_strand_, bool write_electrostatic_interactions_of_all_residues_, core::Size rkde_PK_id_counter, core::Size rkde_in_strands_PK_id_counter)
 
core::Size protocols::features::strand_assembly::write_AA_kind_to_a_file (string tag, StructureID struct_id, utility::sql_database::sessionOP db_session, core::Size sw_can_by_sh_id, core::Size sw_res_size)
 
core::Size protocols::features::strand_assembly::write_AA_distribution_with_direction_to_a_file (string tag, StructureID struct_id, utility::sql_database::sessionOP db_session)
 
core::Size protocols::features::strand_assembly::write_AA_distribution_without_direction_to_a_file (string tag, StructureID struct_id, utility::sql_database::sessionOP db_session)
 
core::Size protocols::features::strand_assembly::write_beta_sheet_capping_info_to_a_file (string tag, core::pose::Pose const &pose, utility::vector1< SandwichFragment > bs_of_sw_can_by_sh, int primary_seq_distance_cutoff_for_beta_sheet_capping_before_N_term_capping_, int primary_seq_distance_cutoff_for_beta_sheet_capping_after_N_term_capping_, int primary_seq_distance_cutoff_for_beta_sheet_capping_before_C_term_capping_, int primary_seq_distance_cutoff_for_beta_sheet_capping_after_C_term_capping_)
 
core::Size protocols::features::strand_assembly::write_chain_B_resNum_to_a_file (string tag, StructureID struct_id, sessionOP db_session, core::Size sw_can_by_sh_id)
 
core::Size protocols::features::strand_assembly::write_heading_direction_of_all_AA_in_a_strand_to_a_file (string tag, StructureID struct_id, sessionOP db_session, core::pose::Pose const &pose, utility::vector1< SandwichFragment > bs_of_sw_can_by_sh)
 
core::Size protocols::features::strand_assembly::write_number_of_electrostatic_interactions_of_residues_to_files (string tag, StructureID struct_id, sessionOP db_session, Pose const &pose, string dssp_code, string heading_direction, Real distance_cutoff_for_electrostatic_interactions_, Real CB_b_factor_cutoff_for_electrostatic_interactions_, core::Size min_primary_seq_distance_diff_for_electrostatic_interactions_)
 
core::Size protocols::features::strand_assembly::write_p_aa_pp_of_AAs_to_a_file (string tag, Pose &dssp_pose)
 
core::Size protocols::features::strand_assembly::write_phi_psi_of_each_residue_to_a_file (string tag, Pose &dssp_pose, utility::vector1< SandwichFragment > bs_of_sw_can_by_sh, bool write_phi_psi_of_E_, bool write_phi_psi_of_all_, core::Size max_num_sw_per_pdb_, StructureID struct_id, sessionOP db_session, Real min_CA_CA_dis_, Real max_CA_CA_dis_)
 
core::Size protocols::features::strand_assembly::write_rama_of_AAs_to_a_file (string tag, Pose &dssp_pose)
 
core::Size protocols::features::strand_assembly::write_resfile_to_a_file_when_seq_rec_is_bad (string tag, StructureID struct_id, utility::sql_database::sessionOP db_session, core::pose::Pose const &pose, utility::vector1< SandwichFragment > bs_of_sw_can_by_sh, bool write_resfile_to_minimize_too_much_hydrophobic_surface_, bool write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_, bool write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_)
 
core::Size protocols::features::strand_assembly::write_resfile_to_a_file (string tag, StructureID struct_id, utility::sql_database::sessionOP db_session, core::pose::Pose const &pose, utility::vector1< SandwichFragment > bs_of_sw_can_by_sh, bool write_resfile_NOT_FWY_on_surface_)
 

Detailed Description

Write to a file after SandwichFeatures.

Author
Doo Nam Kim (doona.nosp@m.m.ki.nosp@m.m@gma.nosp@m.il.c.nosp@m.om) Write AA distribution