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protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer Class Reference

#include <LegacyCalciumMotifScorer.hh>

Inheritance diagram for protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer:
Inheritance graph
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Public Member Functions

 LegacyCalciumMotifScorer ()
 default construct More...
 
 ~LegacyCalciumMotifScorer () override
 
core::Real score (legacy_sewing::AssemblyCOP assembly) override
 
core::Real full_motif_score (legacy_sewing::AssemblyCOP assembly)
 
- Public Member Functions inherited from protocols::legacy_sewing::scoring::LegacyMotifScorer
 LegacyMotifScorer ()
 default construct More...
 
 ~LegacyMotifScorer () override
 
core::Real score (AssemblyCOP assembly) override
 
core::Real norm_motif_score (AssemblyCOP assembly)
 
core::Real full_motif_score (AssemblyCOP assembly)
 
numeric::xyzTransform< core::Realget_stub (utility::vector1< SewSegment > const &segments, core::Size segment_num, core::Size resnum) const
 
core::Real get_score (numeric::xyzTransform< core::Real > stub1, char ss1, char aa1, numeric::xyzTransform< core::Real > stub2, char ss2, char aa2) const
 
void dump_motif (AssemblyCOP assembly) const
 
- Public Member Functions inherited from protocols::legacy_sewing::scoring::LegacyAssemblyScorer
 LegacyAssemblyScorer ()
 default construct More...
 
 ~LegacyAssemblyScorer () override
 

Additional Inherited Members

- Protected Attributes inherited from protocols::legacy_sewing::scoring::LegacyMotifScorer
core::scoring::motif::MotifHashManagermman_
 
core::chemical::ResidueTypeSetCOP res_type_set_
 

Constructor & Destructor Documentation

protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::LegacyCalciumMotifScorer ( )

default construct

protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::~LegacyCalciumMotifScorer ( )
inlineoverride

Member Function Documentation

core::Real protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::full_motif_score ( legacy_sewing::AssemblyCOP  assembly)

use Will's Motif score to calculate the motif score for interactions between a given segment and segments from other models. Divide by total number of segments

References protocols::legacy_sewing::CHIMERA_SEGMENT, protocols::legacy_sewing::scoring::LegacyMotifScorer::get_score(), protocols::legacy_sewing::scoring::LegacyMotifScorer::get_stub(), protocols::legacy_sewing::POSE_SEGMENT, protocols::legacy_sewing::scoring::LegacyMotifScorer::res_type_set_, and score().

Referenced by score().

core::Real protocols::legacy_sewing::scoring::LegacyCalciumMotifScorer::score ( legacy_sewing::AssemblyCOP  assembly)
overridevirtual

Use the negative normalized motif score

Implements protocols::legacy_sewing::scoring::LegacyAssemblyScorer.

References full_motif_score().

Referenced by full_motif_score().


The documentation for this class was generated from the following files: