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protocols::denovo_design::task_operations Namespace Reference

Classes

class  AAFrequencies
 
class  AAFrequency
 
class  ConsensusLoopDatabase
 
class  ConsensusLoopDesignOperation
 
class  ConsensusLoopDesignOperationCreator
 
struct  LoopInfo
 
struct  SurroundingSS
 

Typedefs

typedef
utility::pointer::shared_ptr
< ConsensusLoopDesignOperation
ConsensusLoopDesignOperationOP
 
typedef
utility::pointer::shared_ptr
< ConsensusLoopDesignOperation
const > 
ConsensusLoopDesignOperationCOP
 
typedef
utility::pointer::shared_ptr
< AAFrequency const > 
AAFrequencyOP
 
typedef
utility::pointer::shared_ptr
< AAFrequency const > 
AAFrequencyCOP
 
typedef utility::vector1
< AAFrequencies
LoopAAs
 
typedef utility::vector1
< LoopInfo
LoopInfoVec
 

Functions

utility::vector1< boolmake_aa_bitmap_from_forbidden_aas (std::string const &forbidden_aas)
 
utility::vector1< boolmake_aa_bitmap_from_allowed_aas (std::string const &allowed_aas)
 
std::ostream & operator<< (std::ostream &os, SurroundingSS const &ss)
 
std::ostream & operator<< (std::ostream &os, LoopInfo const &info)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< AAFrequency const > protocols::denovo_design::task_operations::AAFrequencyCOP
typedef utility::pointer::shared_ptr< AAFrequency const > protocols::denovo_design::task_operations::AAFrequencyOP

Function Documentation

utility::vector1< bool > protocols::denovo_design::task_operations::make_aa_bitmap_from_allowed_aas ( std::string const &  allowed_aas)
utility::vector1< bool > protocols::denovo_design::task_operations::make_aa_bitmap_from_forbidden_aas ( std::string const &  forbidden_aas)
std::ostream& protocols::denovo_design::task_operations::operator<< ( std::ostream &  os,
SurroundingSS const &  ss 
)
std::ostream & protocols::denovo_design::task_operations::operator<< ( std::ostream &  os,
LoopInfo const &  info 
)