Rosetta  2020.50
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Namespaces | Functions
RigidChunkClaimer.cc File Reference
#include <protocols/topology_broker/RigidChunkClaimer.hh>
#include <protocols/topology_broker/claims/DofClaim.hh>
#include <protocols/topology_broker/claims/JumpClaim.hh>
#include <protocols/topology_broker/claims/CutClaim.hh>
#include <protocols/topology_broker/claims/BBClaim.hh>
#include <protocols/topology_broker/SequenceNumberResolver.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/id/DOF_ID.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <protocols/comparative_modeling/util.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.tmpl.hh>
#include <protocols/loops/LoopsFileIO.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/comparative_modeling/ThreadingJob.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/import_pose/import_pose.hh>
#include <basic/options/option.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <numeric/numeric.functions.hh>
#include <numeric/xyz.functions.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <vector>
#include <fstream>
#include <protocols/jd2/Job.hh>
#include <utility/vector1.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/tree/Atom.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::topology_broker
 

Functions

static basic::Tracer tr ("protocols.topo_broker", basic::t_info)
 
protocols::loops::Loops protocols::topology_broker::generate_rigid_from_alignment (pose::Pose query_pose, core::sequence::SequenceAlignment const &align, core::Size min_loop_size)
 
void protocols::topology_broker::fix_internal_coords_of_siblings (pose::Pose &pose, pose::Pose const &ref_pose, id::AtomID atom, id::AtomID ref_atom)
 
void protocols::topology_broker::fix_mainchain_connect (pose::Pose &pose, pose::Pose const &ref_pose, core::Size upper_residue)
 
void protocols::topology_broker::copy_internal_coords (pose::Pose &pose, pose::Pose const &ref_pose, loops::Loops core)
 
bool protocols::topology_broker::is_not_neighbor_to_rigid (loops::Loops const &rigid, core::Size pos1, core::Size pos2)
 
bool protocols::topology_broker::connects_rigid_regions (loops::Loops const &rigid, core::Size pos1, core::Size pos2)
 

Function Documentation

static basic::Tracer tr ( "protocols.topo_broker"  ,
basic::t_info   
)
static