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Functions
protocols::evolution::AlignmentCleanerTools Namespace Reference

Functions

static basic::Tracer TR ("protocols.evolution.AlignmentCleanerTools")
 
void thread_sequence_on_pose (core::pose::Pose &pose, std::string const &thread_seq, core::scoring::ScoreFunctionOP scorefxn)
 
std::tuple< std::string,
std::string > 
indel_motif (std::string const &aln_seq, core::Size const motif_radius, core::Size const aln_resi, std::string const &pose_ss_aln)
 
core::Real indel_motif_seq_id (std::string const &motif1, std::string const &motif2)
 
std::string short_ss_loop_filter (std::string ss, core::Size min_loop_length)
 

Function Documentation

std::tuple< std::string, std::string > protocols::evolution::AlignmentCleanerTools::indel_motif ( std::string const &  aln_seq,
core::Size const  motif_radius,
core::Size const  aln_resi,
std::string const &  pose_ss_aln 
)
core::Real protocols::evolution::AlignmentCleanerTools::indel_motif_seq_id ( std::string const &  motif1,
std::string const &  motif2 
)
std::string protocols::evolution::AlignmentCleanerTools::short_ss_loop_filter ( std::string  ss,
core::Size  min_loop_length 
)
void protocols::evolution::AlignmentCleanerTools::thread_sequence_on_pose ( core::pose::Pose pose,
std::string const &  thread_seq,
core::scoring::ScoreFunctionOP  scorefxn 
)
static basic::Tracer protocols::evolution::AlignmentCleanerTools::TR ( "protocols.evolution.AlignmentCleanerTools"  )
static