a vector of vall chunks
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#include <VallProvider.hh>
protocols::frag_picker::VallProvider::VallProvider |
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protocols::frag_picker::VallProvider::~VallProvider |
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overridedefault |
returns a certain chunk (starts from 1)
References chunks_.
VallChunkOP protocols::frag_picker::VallProvider::find_chunk |
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std::string |
pdb_id, |
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char |
chain_id, |
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core::Size |
residue_id |
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) |
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core::Size protocols::frag_picker::VallProvider::get_largest_chunk_size |
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inline |
says what is the length of the largest chunk known to this provider
References largest_chunk_size_.
VallProviderCOP protocols::frag_picker::VallProvider::get_self_ptr |
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const |
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inline |
VallProviderCAP protocols::frag_picker::VallProvider::get_self_weak_ptr |
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const |
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inline |
VallProviderAP protocols::frag_picker::VallProvider::get_self_weak_ptr |
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inline |
std::string protocols::frag_picker::VallProvider::get_vall_by_key |
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core::Size |
index | ) |
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inline |
core::Size protocols::frag_picker::VallProvider::get_vall_count |
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inline |
core::Size protocols::frag_picker::VallProvider::get_vall_last_residue_key_by_key |
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core::Size |
index | ) |
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inline |
void protocols::frag_picker::VallProvider::push_back |
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VallChunkOP |
what | ) |
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inline |
adds a new chunk to this provider
References chunks_.
core::Size protocols::frag_picker::VallProvider::size |
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inline |
says how many chunks do we have
References chunks_.
core::Size protocols::frag_picker::VallProvider::vallChunksFromLibraries |
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utility::vector1< std::string > const & |
fns | ) |
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core::Size protocols::frag_picker::VallProvider::vallChunksFromLibrary |
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std::string const & |
filename, |
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core::Size |
startline = 1 , |
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core::Size |
endline = 0 |
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) |
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core::Size protocols::frag_picker::VallProvider::vallNumLines |
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std::string const & |
filename | ) |
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Runs through the Vall and stores number of lines.
std::string protocols::frag_picker::VallProvider::cached_pose_id_ |
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std::string protocols::frag_picker::VallProvider::cached_profile_id_ |
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private |
utility::vector1<VallChunkOP> protocols::frag_picker::VallProvider::chunks_ |
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private |
core::Size protocols::frag_picker::VallProvider::largest_chunk_size_ |
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std::string protocols::frag_picker::VallProvider::poly_A_seq_ |
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private |
utility::vector1<core::Size> protocols::frag_picker::VallProvider::vall_end_line_ |
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utility::vector1<std::string> protocols::frag_picker::VallProvider::vall_keys_ |
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utility::vector1<core::Size> protocols::frag_picker::VallProvider::vall_last_residue_key_ |
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private |
utility::vector1<core::Size> protocols::frag_picker::VallProvider::vall_start_line_ |
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private |
The documentation for this class was generated from the following files: