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protocols::stepwise::screener Namespace Reference

Classes

class  AlignRMSD_Screener
 
class  AnchorSugarScreener
 
class  BaseBinMapUpdater
 
class  BaseCentroidScreener
 
class  BulgeApplier
 
class  CentroidDistanceScreener
 
class  FastForwardToNextResidueAlternative
 
class  FastForwardToNextRigidBody
 
class  IntegrationTestBreaker
 
class  O2PrimeScreener
 
class  PackScreener
 
class  PartitionContactScreener
 
class  PhosphateScreener
 
class  PoseSelectionScreener
 
class  ProteinCCD_ClosureScreener
 
class  ResidueContactScreener
 
class  RNA_ChainClosableGeometryResidueBasedScreener
 
class  RNA_ChainClosableGeometryScreener
 
class  RNA_ChainClosableGeometryStubBasedScreener
 
class  RNA_ChainClosureScreener
 
class  SampleApplier
 
class  Scorer
 
class  StepWiseResiduePairScreener
 
class  StepWiseScreener
 
class  StubApplier
 
class  StubDistanceScreener
 
class  SugarInstantiator
 
class  TagDefinition
 
class  VDW_BinScreener
 

Typedefs

typedef
utility::pointer::shared_ptr
< AlignRMSD_Screener
AlignRMSD_ScreenerOP
 
typedef
utility::pointer::shared_ptr
< AlignRMSD_Screener const > 
AlignRMSD_ScreenerCOP
 
typedef
utility::pointer::shared_ptr
< AnchorSugarScreener
AnchorSugarScreenerOP
 
typedef
utility::pointer::shared_ptr
< AnchorSugarScreener const > 
AnchorSugarScreenerCOP
 
typedef
utility::pointer::shared_ptr
< BaseBinMapUpdater
BaseBinMapUpdaterOP
 
typedef
utility::pointer::shared_ptr
< BaseBinMapUpdater const > 
BaseBinMapUpdaterCOP
 
typedef
utility::pointer::shared_ptr
< BaseCentroidScreener
BaseCentroidScreenerOP
 
typedef
utility::pointer::shared_ptr
< BaseCentroidScreener const > 
BaseCentroidScreenerCOP
 
typedef
utility::pointer::shared_ptr
< BulgeApplier
BulgeApplierOP
 
typedef
utility::pointer::shared_ptr
< BulgeApplier const > 
BulgeApplierCOP
 
typedef
utility::pointer::shared_ptr
< CentroidDistanceScreener
CentroidDistanceScreenerOP
 
typedef
utility::pointer::shared_ptr
< CentroidDistanceScreener
const > 
CentroidDistanceScreenerCOP
 
typedef
utility::pointer::shared_ptr
< FastForwardToNextResidueAlternative
FastForwardToNextResidueAlternativeOP
 
typedef
utility::pointer::shared_ptr
< FastForwardToNextResidueAlternative
const > 
FastForwardToNextResidueAlternativeCOP
 
typedef
utility::pointer::shared_ptr
< FastForwardToNextRigidBody
FastForwardToNextRigidBodyOP
 
typedef
utility::pointer::shared_ptr
< FastForwardToNextRigidBody
const > 
FastForwardToNextRigidBodyCOP
 
typedef
utility::pointer::shared_ptr
< IntegrationTestBreaker
IntegrationTestBreakerOP
 
typedef
utility::pointer::shared_ptr
< IntegrationTestBreaker const > 
IntegrationTestBreakerCOP
 
typedef
utility::pointer::shared_ptr
< O2PrimeScreener
O2PrimeScreenerOP
 
typedef
utility::pointer::shared_ptr
< O2PrimeScreener const > 
O2PrimeScreenerCOP
 
typedef
utility::pointer::shared_ptr
< PackScreener
PackScreenerOP
 
typedef
utility::pointer::shared_ptr
< PackScreener const > 
PackScreenerCOP
 
typedef
utility::pointer::shared_ptr
< PartitionContactScreener
PartitionContactScreenerOP
 
typedef
utility::pointer::shared_ptr
< PartitionContactScreener
const > 
PartitionContactScreenerCOP
 
typedef
utility::pointer::shared_ptr
< PhosphateScreener
PhosphateScreenerOP
 
typedef
utility::pointer::shared_ptr
< PhosphateScreener const > 
PhosphateScreenerCOP
 
typedef
utility::pointer::shared_ptr
< PoseSelectionScreener
PoseSelectionScreenerOP
 
typedef
utility::pointer::shared_ptr
< PoseSelectionScreener const > 
PoseSelectionScreenerCOP
 
typedef
utility::pointer::shared_ptr
< ProteinCCD_ClosureScreener
ProteinCCD_ClosureScreenerOP
 
typedef
utility::pointer::shared_ptr
< ProteinCCD_ClosureScreener
const > 
ProteinCCD_ClosureScreenerCOP
 
typedef
utility::pointer::shared_ptr
< ResidueContactScreener
ResidueContactScreenerOP
 
typedef
utility::pointer::shared_ptr
< ResidueContactScreener const > 
ResidueContactScreenerCOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosableGeometryResidueBasedScreener
RNA_ChainClosableGeometryResidueBasedScreenerOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosableGeometryResidueBasedScreener
const > 
RNA_ChainClosableGeometryResidueBasedScreenerCOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosableGeometryScreener
RNA_ChainClosableGeometryScreenerOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosableGeometryScreener
const > 
RNA_ChainClosableGeometryScreenerCOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosableGeometryStubBasedScreener
RNA_ChainClosableGeometryStubBasedScreenerOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosableGeometryStubBasedScreener
const > 
RNA_ChainClosableGeometryStubBasedScreenerCOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosureScreener
RNA_ChainClosureScreenerOP
 
typedef
utility::pointer::shared_ptr
< RNA_ChainClosureScreener
const > 
RNA_ChainClosureScreenerCOP
 
typedef
utility::pointer::shared_ptr
< SampleApplier
SampleApplierOP
 
typedef
utility::pointer::shared_ptr
< SampleApplier const > 
SampleApplierCOP
 
typedef
utility::pointer::shared_ptr
< Scorer
ScorerOP
 
typedef
utility::pointer::shared_ptr
< Scorer const > 
ScorerCOP
 
typedef
utility::pointer::shared_ptr
< StepWiseResiduePairScreener
StepWiseResiduePairScreenerOP
 
typedef
utility::pointer::shared_ptr
< StepWiseResiduePairScreener
const > 
StepWiseResiduePairScreenerCOP
 
typedef
utility::pointer::shared_ptr
< StepWiseScreener
StepWiseScreenerOP
 
typedef
utility::pointer::shared_ptr
< StepWiseScreener const > 
StepWiseScreenerCOP
 
typedef
utility::pointer::shared_ptr
< StubApplier
StubApplierOP
 
typedef
utility::pointer::shared_ptr
< StubApplier const > 
StubApplierCOP
 
typedef
utility::pointer::shared_ptr
< StubDistanceScreener
StubDistanceScreenerOP
 
typedef
utility::pointer::shared_ptr
< StubDistanceScreener const > 
StubDistanceScreenerCOP
 
typedef
utility::pointer::shared_ptr
< SugarInstantiator
SugarInstantiatorOP
 
typedef
utility::pointer::shared_ptr
< SugarInstantiator const > 
SugarInstantiatorCOP
 
typedef
utility::pointer::shared_ptr
< TagDefinition
TagDefinitionOP
 
typedef
utility::pointer::shared_ptr
< TagDefinition const > 
TagDefinitionCOP
 
typedef
utility::pointer::shared_ptr
< VDW_BinScreener
VDW_BinScreenerOP
 
typedef
utility::pointer::shared_ptr
< VDW_BinScreener const > 
VDW_BinScreenerCOP
 

Enumerations

enum  StepWiseScreenerType {
  NONE, ALIGN_RMSD, ANCHOR_SUGAR, ATR_REP,
  BASE_BIN_MAP, BASE_CENTROID, BULGE_APPLIER, CENTROID_DISTANCE,
  FAST_FORWARD_TO_NEXT_RIGID_BODY, FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE, INTEGRATION_TEST, O2PRIME_PACK,
  PACK, PARTITION_CONTACT, PHOSPHATE_PACK, POSE_SELECTION,
  PROTEIN_ATR_REP, RESIDUE_APPLIER, RESIDUE_CONTACT, PROTEIN_CCD_CLOSURE,
  RNA_CHAIN_CLOSURE, RNA_CHAIN_CLOSABLE_GEOMETRY, RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED, RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED,
  SAMPLE_APPLIER, SAMPLE_APPLIER_WITH_RESIDUE_LIST, SCORER, SIMPLE_POSE_SELECTION,
  SIMPLE_RMSD, STUB_APPLIER, STUB_DISTANCE, SUGAR_INSTANTIATOR,
  TAG_DEFINITION, VDW_ATR_REP, VDW_BIN
}
 

Functions

void fast_forward_to_next_residue_pair (sampler::StepWiseSamplerOP sampler, core::Size const res1, core::Size const res2)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< AlignRMSD_Screener const > protocols::stepwise::screener::AlignRMSD_ScreenerCOP
typedef utility::pointer::shared_ptr< AnchorSugarScreener const > protocols::stepwise::screener::AnchorSugarScreenerCOP
typedef utility::pointer::shared_ptr< BaseBinMapUpdater const > protocols::stepwise::screener::BaseBinMapUpdaterCOP
typedef utility::pointer::shared_ptr< BulgeApplier const > protocols::stepwise::screener::BulgeApplierCOP
typedef utility::pointer::shared_ptr< BulgeApplier > protocols::stepwise::screener::BulgeApplierOP
typedef utility::pointer::shared_ptr< O2PrimeScreener const > protocols::stepwise::screener::O2PrimeScreenerCOP
typedef utility::pointer::shared_ptr< O2PrimeScreener > protocols::stepwise::screener::O2PrimeScreenerOP
typedef utility::pointer::shared_ptr< PackScreener const > protocols::stepwise::screener::PackScreenerCOP
typedef utility::pointer::shared_ptr< PackScreener > protocols::stepwise::screener::PackScreenerOP
typedef utility::pointer::shared_ptr< PhosphateScreener const > protocols::stepwise::screener::PhosphateScreenerCOP
typedef utility::pointer::shared_ptr< SampleApplier const > protocols::stepwise::screener::SampleApplierCOP
typedef utility::pointer::shared_ptr< SampleApplier > protocols::stepwise::screener::SampleApplierOP
typedef utility::pointer::shared_ptr< Scorer const > protocols::stepwise::screener::ScorerCOP
typedef utility::pointer::shared_ptr< Scorer > protocols::stepwise::screener::ScorerOP
typedef utility::pointer::shared_ptr< StepWiseScreener const > protocols::stepwise::screener::StepWiseScreenerCOP
typedef utility::pointer::shared_ptr< StubApplier const > protocols::stepwise::screener::StubApplierCOP
typedef utility::pointer::shared_ptr< StubApplier > protocols::stepwise::screener::StubApplierOP
typedef utility::pointer::shared_ptr< SugarInstantiator const > protocols::stepwise::screener::SugarInstantiatorCOP
typedef utility::pointer::shared_ptr< TagDefinition const > protocols::stepwise::screener::TagDefinitionCOP
typedef utility::pointer::shared_ptr< TagDefinition > protocols::stepwise::screener::TagDefinitionOP
typedef utility::pointer::shared_ptr< VDW_BinScreener const > protocols::stepwise::screener::VDW_BinScreenerCOP
typedef utility::pointer::shared_ptr< VDW_BinScreener > protocols::stepwise::screener::VDW_BinScreenerOP

Enumeration Type Documentation

Enumerator
NONE 
ALIGN_RMSD 
ANCHOR_SUGAR 
ATR_REP 
BASE_BIN_MAP 
BASE_CENTROID 
BULGE_APPLIER 
CENTROID_DISTANCE 
FAST_FORWARD_TO_NEXT_RIGID_BODY 
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE 
INTEGRATION_TEST 
O2PRIME_PACK 
PACK 
PARTITION_CONTACT 
PHOSPHATE_PACK 
POSE_SELECTION 
PROTEIN_ATR_REP 
RESIDUE_APPLIER 
RESIDUE_CONTACT 
PROTEIN_CCD_CLOSURE 
RNA_CHAIN_CLOSURE 
RNA_CHAIN_CLOSABLE_GEOMETRY 
RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED 
RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED 
SAMPLE_APPLIER 
SAMPLE_APPLIER_WITH_RESIDUE_LIST 
SCORER 
SIMPLE_POSE_SELECTION 
SIMPLE_RMSD 
STUB_APPLIER 
STUB_DISTANCE 
SUGAR_INSTANTIATOR 
TAG_DEFINITION 
VDW_ATR_REP 
VDW_BIN 

Function Documentation

void protocols::stepwise::screener::fast_forward_to_next_residue_pair ( sampler::StepWiseSamplerOP  sampler,
core::Size const  res1,
core::Size const  res2 
)