Rosetta  2020.37
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protocols::dna_dock::DNAClashCheckFilter Class Reference

#include <DNAClashCheckFilter.hh>

Inheritance diagram for protocols::dna_dock::DNAClashCheckFilter:
Inheritance graph

Public Types

typedef protocols::filters::Filter Super
typedef protocols::filters::Filter Filter
typedef core::Real Real
typedef core::pose::Pose Pose
typedef utility::tag::TagCOP TagCOP
typedef basic::datacache::DataMap DataMap

Public Member Functions

 DNAClashCheckFilter ()
 DNAClashCheckFilter (core::Real const fa_rep_thresh, std::string dna_a_path, std::string dna_b_path)
 DNAClashCheckFilter (DNAClashCheckFilter const &rval)
 ~DNAClashCheckFilter () override
protocols::filters::FilterOP clone () const override
protocols::filters::FilterOP fresh_instance () const override
std::string name () const override
void set_fa_rep_thresh (core::Real fa_rep_thresh)
void set_dna_a_path (std::string dna_a_path)
void set_dna_b_path (std::string dna_b_path)
core::Real get_fa_rep_thresh () const
std::string get_dna_a_path () const
std::string get_dna_b_path () const
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
 ~Filter () override
virtual void report (std::ostream &, core::pose::Pose const &) const
virtual core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...

Private Attributes

core::Real fa_rep_thresh_
std::string dna_a_path_
std::string dna_b_path_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Member Typedef Documentation

typedef basic::datacache::DataMap protocols::dna_dock::DNAClashCheckFilter::DataMap

Constructor & Destructor Documentation

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter ( )
protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter ( core::Real const  fa_rep_thresh,
std::string  dna_a_path,
std::string  dna_b_path 
protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter ( DNAClashCheckFilter const &  rval)
protocols::dna_dock::DNAClashCheckFilter::~DNAClashCheckFilter ( )

Member Function Documentation

bool protocols::dna_dock::DNAClashCheckFilter::apply ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::clone ( ) const
protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::fresh_instance ( ) const
std::string protocols::dna_dock::DNAClashCheckFilter::get_dna_a_path ( ) const

References dna_a_path_.

std::string protocols::dna_dock::DNAClashCheckFilter::get_dna_b_path ( ) const

References dna_b_path_.

core::Real protocols::dna_dock::DNAClashCheckFilter::get_fa_rep_thresh ( ) const

References fa_rep_thresh_.

std::string protocols::dna_dock::DNAClashCheckFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

void protocols::dna_dock::DNAClashCheckFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &   

parse xml

Reimplemented from protocols::filters::Filter.

References dna_a_path_, dna_b_path_, and fa_rep_thresh_.

void protocols::dna_dock::DNAClashCheckFilter::set_dna_a_path ( std::string  dna_a_path)

References dna_a_path_.

void protocols::dna_dock::DNAClashCheckFilter::set_dna_b_path ( std::string  dna_b_path)

References dna_b_path_.

void protocols::dna_dock::DNAClashCheckFilter::set_fa_rep_thresh ( core::Real  fa_rep_thresh)

References fa_rep_thresh_.

Member Data Documentation

std::string protocols::dna_dock::DNAClashCheckFilter::dna_a_path_
std::string protocols::dna_dock::DNAClashCheckFilter::dna_b_path_
core::Real protocols::dna_dock::DNAClashCheckFilter::fa_rep_thresh_

The documentation for this class was generated from the following files: