Rosetta: protocols::dna_dock::DNAClashCheckFilter Class Reference

Rosetta

#include <DNAClashCheckFilter.hh>

Inheritance diagram for protocols::dna_dock::DNAClashCheckFilter:

Inheritance graph

[legend]

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef utility::tag::TagCOP	TagCOP

typedef basic::datacache::DataMap	DataMap

Public Member Functions
	DNAClashCheckFilter ()

	DNAClashCheckFilter (core::Real const fa_rep_thresh, std::string dna_a_path, std::string dna_b_path)

	DNAClashCheckFilter (DNAClashCheckFilter const &rval)

	~DNAClashCheckFilter () override

protocols::filters::FilterOP	clone () const override

protocols::filters::FilterOP	fresh_instance () const override

std::string	name () const override

void	set_fa_rep_thresh (core::Real fa_rep_thresh)

void	set_dna_a_path (std::string dna_a_path)

void	set_dna_b_path (std::string dna_b_path)

core::Real	get_fa_rep_thresh () const

std::string	get_dna_a_path () const

std::string	get_dna_b_path () const

void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
	parse xml More...

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Private Attributes
core::Real	fa_rep_thresh_

std::string	dna_a_path_

std::string	dna_b_path_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

◆ DataMap

typedef basic::datacache::DataMap protocols::dna_dock::DNAClashCheckFilter::DataMap

◆ Filter

typedef protocols::filters::Filter protocols::dna_dock::DNAClashCheckFilter::Filter

◆ FilterOP

typedef protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::FilterOP

◆ Pose

typedef core::pose::Pose protocols::dna_dock::DNAClashCheckFilter::Pose

◆ Real

typedef core::Real protocols::dna_dock::DNAClashCheckFilter::Real

◆ Super

typedef protocols::filters::Filter protocols::dna_dock::DNAClashCheckFilter::Super

◆ TagCOP

typedef utility::tag::TagCOP protocols::dna_dock::DNAClashCheckFilter::TagCOP

Constructor & Destructor Documentation

◆ DNAClashCheckFilter() [1/3]

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter ( )

◆ DNAClashCheckFilter() [2/3]

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter	(	core::Real const	fa_rep_thresh,
		std::string	dna_a_path,
		std::string	dna_b_path
	)

◆ DNAClashCheckFilter() [3/3]

protocols::dna_dock::DNAClashCheckFilter::DNAClashCheckFilter ( DNAClashCheckFilter const & rval )

default

◆ ~DNAClashCheckFilter()

protocols::dna_dock::DNAClashCheckFilter::~DNAClashCheckFilter ( )

overridedefault

Member Function Documentation

◆ apply()

bool protocols::dna_dock::DNAClashCheckFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References core::pose::append_pose_to_pose(), dna_a_path_, dna_b_path_, core::pose::Pose::energies(), core::scoring::fa_rep, fa_rep_thresh_, core::import_pose::PDB_file, core::import_pose::pose_from_file(), core::id::to_string(), core::scoring::Energies::total_energies(), and protocols::TR().

◆ clone()

protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ fresh_instance()

protocols::filters::FilterOP protocols::dna_dock::DNAClashCheckFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

◆ get_dna_a_path()

std::string protocols::dna_dock::DNAClashCheckFilter::get_dna_a_path ( ) const

References dna_a_path_.

◆ get_dna_b_path()

std::string protocols::dna_dock::DNAClashCheckFilter::get_dna_b_path ( ) const

References dna_b_path_.

◆ get_fa_rep_thresh()

core::Real protocols::dna_dock::DNAClashCheckFilter::get_fa_rep_thresh ( ) const

References fa_rep_thresh_.

◆ name()

std::string protocols::dna_dock::DNAClashCheckFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

◆ parse_my_tag()

void protocols::dna_dock::DNAClashCheckFilter::parse_my_tag	(	TagCOP	tag,
		basic::datacache::DataMap &
	)

overridevirtual

parse xml

Reimplemented from protocols::filters::Filter.

References dna_a_path_, dna_b_path_, and fa_rep_thresh_.

◆ set_dna_a_path()

void protocols::dna_dock::DNAClashCheckFilter::set_dna_a_path ( std::string dna_a_path )

References dna_a_path_.

◆ set_dna_b_path()

void protocols::dna_dock::DNAClashCheckFilter::set_dna_b_path ( std::string dna_b_path )

References dna_b_path_.

◆ set_fa_rep_thresh()

void protocols::dna_dock::DNAClashCheckFilter::set_fa_rep_thresh ( core::Real fa_rep_thresh )

References fa_rep_thresh_.

Member Data Documentation

◆ dna_a_path_

std::string protocols::dna_dock::DNAClashCheckFilter::dna_a_path_

private

Referenced by apply(), get_dna_a_path(), parse_my_tag(), and set_dna_a_path().

◆ dna_b_path_

std::string protocols::dna_dock::DNAClashCheckFilter::dna_b_path_

private

Referenced by apply(), get_dna_b_path(), parse_my_tag(), and set_dna_b_path().

◆ fa_rep_thresh_

core::Real protocols::dna_dock::DNAClashCheckFilter::fa_rep_thresh_

private

Referenced by apply(), get_fa_rep_thresh(), parse_my_tag(), and set_fa_rep_thresh().

The documentation for this class was generated from the following files:

src/protocols/dna_dock/DNAClashCheckFilter.hh
src/protocols/dna_dock/DNAClashCheckFilter.cc