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protocols::loop_grower::FragmentExtension Member List

This is the complete list of members for protocols::loop_grower::FragmentExtension, including all inherited members.

apply(core::pose::Pose &pose) overrideprotocols::loop_grower::FragmentExtensionvirtual
assign_incomplete_protocols::loop_grower::FragmentExtensionprivate
asymmdump_protocols::loop_grower::FragmentExtensionprivate
auto_stop_protocols::loop_grower::FragmentExtensionprivate
beamscorecutoff_protocols::loop_grower::FragmentExtensionprivate
beamwidth_protocols::loop_grower::FragmentExtensionprivate
cbreaks_protocols::loop_grower::FragmentExtensionprivate
cen_sf_protocols::loop_grower::FragmentExtensionprivate
cenrot_protocols::loop_grower::FragmentExtensionprivate
cenrot_sf_protocols::loop_grower::FragmentExtensionprivate
chainbreak_protocols::loop_grower::FragmentExtensionprivate
checksymm_protocols::loop_grower::FragmentExtensionprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::loop_grower::FragmentExtensionvirtual
cluster_fragments(utility::vector1< core::fragment::FragSetOP > &fragments, core::Real fragfilter)protocols::loop_grower::FragmentExtension
clustercheck_protocols::loop_grower::FragmentExtensionprivate
continuous_sheets_protocols::loop_grower::FragmentExtensionprivate
continuous_weight_protocols::loop_grower::FragmentExtensionprivate
coordfile_protocols::loop_grower::FragmentExtensionprivate
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
debug_protocols::loop_grower::FragmentExtensionprivate
direction_protocols::loop_grower::FragmentExtensionprivate
dumpbeam_protocols::loop_grower::FragmentExtensionprivate
dumperrors_protocols::loop_grower::FragmentExtensionprivate
dumpfinalbeam_protocols::loop_grower::FragmentExtensionprivate
dumpfragments_protocols::loop_grower::FragmentExtensionprivate
dumprms_protocols::loop_grower::FragmentExtensionprivate
fa_bonus_protocols::loop_grower::FragmentExtensionprivate
fafilter_protocols::loop_grower::FragmentExtensionprivate
famin_protocols::loop_grower::FragmentExtensionprivate
fastaname_protocols::loop_grower::FragmentExtensionprivate
filterbeams_protocols::loop_grower::FragmentExtensionprivate
filterprevious_protocols::loop_grower::FragmentExtensionprivate
frag_sizes_protocols::loop_grower::FragmentExtensionprivate
fragcluster_protocols::loop_grower::FragmentExtensionprivate
fragmelt_protocols::loop_grower::FragmentExtensionprivate
FragmentExtension()protocols::loop_grower::FragmentExtension
fragments_protocols::loop_grower::FragmentExtensionprivate
fragseqprotocols::loop_grower::FragmentExtensionprivate
fragtrials_protocols::loop_grower::FragmentExtensionprivate
fresh_instance() const overrideprotocols::loop_grower::FragmentExtensionvirtual
fullength_seq_protocols::loop_grower::FragmentExtensionprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::loop_grower::FragmentExtensioninlinevirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
get_unaligned(core::id::SequenceMapping const &seqmap) constprotocols::loop_grower::FragmentExtension
greedy_protocols::loop_grower::FragmentExtensionprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
looporder_protocols::loop_grower::FragmentExtensionprivate
master_beam_cutoff_protocols::loop_grower::FragmentExtensionprivate
master_beam_width_protocols::loop_grower::FragmentExtensionprivate
maxloopsize_protocols::loop_grower::FragmentExtensionprivate
minimize_protocols::loop_grower::FragmentExtensionprivate
minmelt_protocols::loop_grower::FragmentExtensionprivate
montecarlorounds_protocols::loop_grower::FragmentExtensionprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::loop_grower::FragmentExtensionstatic
name()protocols::moves::Moverinlinestatic
native_protocols::loop_grower::FragmentExtensionprivate
native_pose_protocols::moves::Moverprivate
nativegrow_protocols::loop_grower::FragmentExtensionprivate
nfrags_protocols::loop_grower::FragmentExtensionprivate
pack_min_cycles_protocols::loop_grower::FragmentExtensionprivate
parallelcount_protocols::loop_grower::FragmentExtensionprivate
parametercheck_protocols::loop_grower::FragmentExtensionprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::loop_grower::FragmentExtensionvirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overrideprotocols::loop_grower::FragmentExtensionvirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::loop_grower::FragmentExtensionstatic
read_from_file_protocols::loop_grower::FragmentExtensionprivate
readbeams_protocols::loop_grower::FragmentExtensionprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
rephasemap_protocols::loop_grower::FragmentExtensionprivate
rescorebeams_protocols::loop_grower::FragmentExtensionprivate
reset_status()protocols::moves::Mover
rmscutoff_protocols::loop_grower::FragmentExtensionprivate
rmswindow_protocols::loop_grower::FragmentExtensionprivate
samplesheets_protocols::loop_grower::FragmentExtensionprivate
sc_scale_protocols::loop_grower::FragmentExtensionprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
sf_protocols::loop_grower::FragmentExtensionprivate
sheet_tolerance_protocols::loop_grower::FragmentExtensionprivate
sheetbonus_protocols::loop_grower::FragmentExtensionprivate
sheetcriteria_protocols::loop_grower::FragmentExtensionprivate
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
skeleton_file_protocols::loop_grower::FragmentExtensionprivate
steps_protocols::loop_grower::FragmentExtensionprivate
storedbeams_protocols::loop_grower::FragmentExtensionprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
trackfragments_protocols::loop_grower::FragmentExtensionprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
window_dens_weight_protocols::loop_grower::FragmentExtensionprivate
writebeams_protocols::loop_grower::FragmentExtensionprivate
writelps_protocols::loop_grower::FragmentExtensionprivate