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protocols::buns::BuriedUnsatHbondFilter2 Class Reference

filters based on an upper bound # of buried unsatisfied polar residues More...

#include <BuriedUnsatHbondFilter2.hh>

Inheritance diagram for protocols::buns::BuriedUnsatHbondFilter2:
Inheritance graph
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Public Member Functions

 BuriedUnsatHbondFilter2 ()
 
 BuriedUnsatHbondFilter2 (core::Size const upper_threshold, core::Size const jump_num)
 
 BuriedUnsatHbondFilter2 (BuriedUnsatHbondFilter2 const &rval)
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
core::Size compute (core::pose::Pose const &pose) const
 
 ~BuriedUnsatHbondFilter2 () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
void task_factory (core::pack::task::TaskFactoryOP tf)
 
core::pack::task::TaskFactoryOP task_factory () const
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::scoring::ScoreFunctionCOP sfxn_
 
core::Size upper_threshold_
 
core::Size jump_num_
 
core::pack::task::TaskFactoryOP task_factory_
 
protocols::buns::BuriedUnsatisfiedPolarsCalculator2OP calc_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Detailed Description

filters based on an upper bound # of buried unsatisfied polar residues

Constructor & Destructor Documentation

protocols::buns::BuriedUnsatHbondFilter2::BuriedUnsatHbondFilter2 ( )
protocols::buns::BuriedUnsatHbondFilter2::BuriedUnsatHbondFilter2 ( core::Size const  upper_threshold,
core::Size const  jump_num 
)
protocols::buns::BuriedUnsatHbondFilter2::BuriedUnsatHbondFilter2 ( BuriedUnsatHbondFilter2 const &  rval)
protocols::buns::BuriedUnsatHbondFilter2::~BuriedUnsatHbondFilter2 ( )
overridedefault

Member Function Documentation

bool protocols::buns::BuriedUnsatHbondFilter2::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and upper_threshold_.

std::string protocols::buns::BuriedUnsatHbondFilter2::class_name ( )
static
protocols::filters::FilterOP protocols::buns::BuriedUnsatHbondFilter2::clone ( ) const
inlineoverridevirtual
core::Size protocols::buns::BuriedUnsatHbondFilter2::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::buns::BuriedUnsatHbondFilter2::fresh_instance ( ) const
inlineoverridevirtual
std::string protocols::buns::BuriedUnsatHbondFilter2::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::buns::BuriedUnsatHbondFilter2::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References calc_, core::scoring::get_score_function(), core::scoring::get_score_function_name(), jump_num_, core::pack::task::parse_task_operations(), sfxn_, task_factory(), and upper_threshold_.

void protocols::buns::BuriedUnsatHbondFilter2::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::buns::BuriedUnsatHbondFilter2::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::buns::BuriedUnsatHbondFilter2::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::buns::BuriedUnsatHbondFilter2::task_factory ( core::pack::task::TaskFactoryOP  tf)

References task_factory_.

core::pack::task::TaskFactoryOP protocols::buns::BuriedUnsatHbondFilter2::task_factory ( ) const

References task_factory_.

Referenced by compute(), and parse_my_tag().

Member Data Documentation

protocols::buns::BuriedUnsatisfiedPolarsCalculator2OP protocols::buns::BuriedUnsatHbondFilter2::calc_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::buns::BuriedUnsatHbondFilter2::jump_num_
private

Referenced by compute(), and parse_my_tag().

core::scoring::ScoreFunctionCOP protocols::buns::BuriedUnsatHbondFilter2::sfxn_
private

Referenced by parse_my_tag().

core::pack::task::TaskFactoryOP protocols::buns::BuriedUnsatHbondFilter2::task_factory_
private

Referenced by compute(), and task_factory().

core::Size protocols::buns::BuriedUnsatHbondFilter2::upper_threshold_
private

Referenced by apply(), and parse_my_tag().


The documentation for this class was generated from the following files: