AtomICoor.cc File Reference

declaration of implementation class for abstract class Residue More...

#include <core/chemical/AtomICoor.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/Stub.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMapObj.hh>
#include <ObjexxFCL/string.functions.hh>
#include <numeric/NumericTraits.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::chemical

Typedefs
using	core::chemical::AtomMemo = basic::datacache::DataMapObj< std::set< std::string > >
using	core::chemical::AtomMemoOP = utility::pointer::shared_ptr< AtomMemo >

Functions
static basic::Tracer	core::chemical::TR ("core.chemical.AtomICoor")
ICoordAtomIDType	core::chemical::string_to_icoord_type (std::string const &)
	Convert a string designation into the corresponding ICoordAtomIDType enum. More...
Size	core::chemical::get_connection_number (std::string const &)
	Get the connection number from a string representing an CONNECT type (e.g. 4 from CONN4) More...
void	core::chemical::pretty_print_atomicoor (std::ostream &out, AtomICoor const &start, ResidueType const &rsd_type, core::Size indent, AtomMemoOP memo)
void	core::chemical::pretty_print_atomicoor (std::ostream &out, ResidueType const &rsd_type)
	print the icoord table starting at the root. More...
void	core::chemical::pretty_print_atomicoor (std::ostream &out, AtomICoor const &start, ResidueType const &rsd_type, core::Size indent=0)
	print the icoord table starting with the given icoord record More...
std::ostream &	core::chemical::operator<< (std::ostream &out, ICoordAtomIDType type)

Detailed Description

declaration of implementation class for abstract class Residue

Author

Phil Bradley

Modified by Sergey Lyskov