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| | RigidBodyRandomTMHMover () |
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| | RigidBodyRandomTMHMover (core::Real max_trans, core::Real rotation_mag, core::Real translation_mag, core::Size tmhelix, protocols::topology_broker::TopologyClaimerOP claimer) |
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| void | apply (core::pose::Pose &pose) override |
| | Main Method. More...
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| std::string | get_name () const override |
| | Each derived class must specify its name. The class name. More...
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| | ~RigidBodyRandomTMHMover () override |
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 Public Member Functions inherited from protocols::rigid::RigidBodyMover |
| | RigidBodyMover () |
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| | RigidBodyMover (int const rb_jump_in, Direction dir_in=n2c) |
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| | RigidBodyMover (RigidBodyMover const &src) |
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| | ~RigidBodyMover () override |
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| void | rot_center (core::Vector const &rot_center_in) |
| | Manual override of rotation center. More...
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| void | show (std::ostream &output=std::cout) const override |
| | Outputs details about the Mover, including current settings. More...
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| bool | preserve_detailed_balance () const override |
| | Return true if detailed balance is being preserved (i.e. no branch angle optimization). More...
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| void | set_preserve_detailed_balance (bool) override |
| | set whether detailed balance is preserved (i.e. no branch angle optimization during moves) More...
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| utility::vector1< core::id::TorsionID_Range > | torsion_id_ranges (core::pose::Pose &pose) override |
| | get the TorsionIDs perturbed by the mover during moves, along with their ranges More...
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| int | rb_jump () const |
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| void | rb_jump (int jump_id) |
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| void | unfreeze () |
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| void | freeze () |
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| | ThermodynamicMover () |
| | Default constructor. More...
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| | ~ThermodynamicMover () override |
| | Default destructor. More...
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| virtual void | initialize_simulation (core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) |
| | Callback executed before any Monte Carlo trials are attempted. More...
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| virtual void | observe_after_metropolis (protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) |
| | Callback executed after the Metropolis criterion is evaluated. More...
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| core::Real | last_proposal_density_ratio () override |
| | Return the proposal density ratio for last apply method. More...
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| virtual void | finalize_simulation (core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) |
| | Callback executed after all Monte Carlo trials are completed. More...
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| virtual bool | is_multi_trial () |
| | Return true if the move performs multiple trials on each apply. More...
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| virtual core::Real | last_inner_score_delta_over_temperature () |
| | If this is a multi-trial move, return the change in internal score/temperature caused by the last call to apply(). More...
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| virtual protocols::canonical_sampling::MetropolisHastingsMoverAP | metropolis_hastings_mover () |
| | If this is a multi-trial move, return the MetropolisHastingsMover being used internally. More...
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| virtual void | set_metropolis_hastings_mover (protocols::canonical_sampling::MetropolisHastingsMoverAP metropolis_hastings_mover) |
| | If this is a multi-trial move, set the MetropolisHastingsMover to be used internally. More...
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| virtual utility::vector1< core::id::DOF_ID_Range > | dof_id_ranges (core::pose::Pose &pose) |
| | Return a list specifying which degrees of freedom may be perturbed by apply(), and the in what range each perturbation may be. More...
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| | Mover () |
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| virtual MoverOP | create () |
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| MoverCOP | get_self_ptr () const |
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| MoverOP | get_self_ptr () |
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| MoverCAP | get_self_weak_ptr () const |
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| MoverAP | get_self_weak_ptr () |
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| | Mover (std::string const &type_name) |
| | sets the type for a mover; name_ has been removed (2010/05/14) More...
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| virtual void | test_move (Pose &pose) |
| | : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
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| virtual MoverOP | clone () const |
| | Return a clone of the Mover object. More...
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| virtual bool | reinitialize_for_each_job () const |
| | Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
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| virtual bool | reinitialize_for_new_input () const |
| | Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
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| virtual MoverOP | fresh_instance () const |
| | Generates a new Mover object freshly created with the default ctor. More...
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| MoverStatus | get_last_move_status () const |
| | end parser interface, start Job Distributor interface///////////// More...
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| void | reset_status () |
| | resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
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| virtual core::pose::PoseOP | get_additional_output () |
| | Mechanism by which a mover may return multiple output poses from a single input pose. More...
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| void | set_type (std::string const &setting) |
| | Set the 'type' string. More...
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| std::string | get_type () const |
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| void | type (const std::string &type_in) |
| | Set the 'type' string. More...
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| std::string const & | type () const |
| | Get the set 'type' string. More...
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| virtual void | set_input_pose (PoseCOP pose) |
| | setter for poses contained for rms More...
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| virtual void | set_native_pose (PoseCOP pose) |
| | setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
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| PoseCOP | get_input_pose () const |
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| PoseCOP | get_native_pose () const |
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| virtual void | parse_my_tag (TagCOP tag, basic::datacache::DataMap &data) |
| | Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing. More...
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| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
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| jobdist::BasicJobCOP | get_current_job () const |
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| virtual void | set_current_tag (std::string const &new_tag) |
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| std::string | get_current_tag () const |
| | A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
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| virtual void | clear_info () |
| | Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
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| virtual Strings & | info () |
| | non-const accessor More...
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| virtual Strings const & | info () const |
| | const accessor More...
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| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| | Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
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