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protocols::antibody::residue_selector::CDRResidueSelector Class Reference

Select CDR residues. More...

#include <CDRResidueSelector.hh>

Inheritance diagram for protocols::antibody::residue_selector::CDRResidueSelector:
Inheritance graph
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Public Member Functions

 CDRResidueSelector ()
 Constructor. More...
 
 CDRResidueSelector (AntibodyInfoCOP ab_info)
 Constructor giving AntibodyInfo. More...
 
 CDRResidueSelector (AntibodyInfoCOP ab_info, utility::vector1< CDRNameEnum > cdrs)
 Constructor Specifying CDRs. More...
 
 CDRResidueSelector (AntibodyInfoCOP ab_info, utility::vector1< bool > cdrs)
 Constructor Specifying CDRs. More...
 
 CDRResidueSelector (CDRResidueSelector const &src)
 Copy Constructor. More...
 
void set_cdr (CDRNameEnum cdr)
 Set a single CDR to select. More...
 
void set_cdrs (utility::vector1< bool > cdrs)
 
void set_cdrs (utility::vector1< CDRNameEnum > cdrs)
 
void set_ab_info (AntibodyInfoCOP ab_info)
 
 ~CDRResidueSelector () override
 Destructor. More...
 
core::select::residue_selector::ResidueSelectorOP clone () const override
 Clone operator. More...
 
core::select::residue_selector::ResidueSubset apply (core::pose::Pose const &pose) const override
 "Apply" function. More...
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override
 XML parse. More...
 
std::string get_name () const override
 Get the mover class name. More...
 
- Public Member Functions inherited from core::select::residue_selector::ResidueSelector
 ResidueSelector ()
 Constructor. More...
 
 ~ResidueSelector () override
 Destructor. More...
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string class_name ()
 Get the mover class name. More...
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 Provide XSD information, enabling mechanical validation of input XML. More...
 

Private Member Functions

void set_defaults ()
 

Private Attributes

AntibodyInfoCOP ab_info_
 
utility::vector1< boolcdrs_
 
AntibodyNumberingSchemeEnum numbering_scheme_
 
CDRDefinitionEnum cdr_definition_
 

Detailed Description

Select CDR residues.

Constructor & Destructor Documentation

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( )

Constructor.

References set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( AntibodyInfoCOP  ab_info)

Constructor giving AntibodyInfo.

References set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( AntibodyInfoCOP  ab_info,
utility::vector1< CDRNameEnum cdrs 
)

Constructor Specifying CDRs.

References set_cdrs(), and set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( AntibodyInfoCOP  ab_info,
utility::vector1< bool cdrs 
)

Constructor Specifying CDRs.

References set_cdrs(), and set_defaults().

protocols::antibody::residue_selector::CDRResidueSelector::CDRResidueSelector ( CDRResidueSelector const &  src)

Copy Constructor.

References ab_info_.

protocols::antibody::residue_selector::CDRResidueSelector::~CDRResidueSelector ( )
overridedefault

Destructor.

Member Function Documentation

ResidueSubset protocols::antibody::residue_selector::CDRResidueSelector::apply ( core::pose::Pose const &  pose) const
overridevirtual

"Apply" function.

Given the pose, generate a vector of bools with entries for every residue in the pose indicating whether each residue is selected ("true") or not ("false").

Implements core::select::residue_selector::ResidueSelector.

References ab_info_, cdr_definition_, cdrs_, core::sequence::end, numbering_scheme_, core::pose::Pose::size(), and protocols::loops::start.

std::string protocols::antibody::residue_selector::CDRResidueSelector::class_name ( )
static
core::select::residue_selector::ResidueSelectorOP protocols::antibody::residue_selector::CDRResidueSelector::clone ( ) const
overridevirtual

Clone operator.

Clone function.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

Copy this object and return owning pointer to the copy (created on the heap).

Implements core::select::residue_selector::ResidueSelector.

std::string protocols::antibody::residue_selector::CDRResidueSelector::get_name ( ) const
overridevirtual

Get the mover class name.

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void protocols::antibody::residue_selector::CDRResidueSelector::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  datamap 
)
overridevirtual
void protocols::antibody::residue_selector::CDRResidueSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static

Provide XSD information, enabling mechanical validation of input XML.

References class_name(), and core::pack::palette::xsd_type_definition_w_attributes().

Referenced by protocols::antibody::residue_selector::CDRResidueSelectorCreator::provide_xml_schema().

void protocols::antibody::residue_selector::CDRResidueSelector::set_ab_info ( AntibodyInfoCOP  ab_info)

References ab_info_.

void protocols::antibody::residue_selector::CDRResidueSelector::set_cdr ( CDRNameEnum  cdr)

Set a single CDR to select.

References cdrs_.

void protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs ( utility::vector1< bool cdrs)

References cdrs_.

Referenced by CDRResidueSelector().

void protocols::antibody::residue_selector::CDRResidueSelector::set_cdrs ( utility::vector1< CDRNameEnum cdrs)

References cdrs_.

void protocols::antibody::residue_selector::CDRResidueSelector::set_defaults ( )
private

Member Data Documentation

AntibodyInfoCOP protocols::antibody::residue_selector::CDRResidueSelector::ab_info_
private
CDRDefinitionEnum protocols::antibody::residue_selector::CDRResidueSelector::cdr_definition_
private

Referenced by apply(), parse_my_tag(), and set_defaults().

utility::vector1< bool > protocols::antibody::residue_selector::CDRResidueSelector::cdrs_
private
AntibodyNumberingSchemeEnum protocols::antibody::residue_selector::CDRResidueSelector::numbering_scheme_
private

Referenced by apply(), parse_my_tag(), and set_defaults().


The documentation for this class was generated from the following files: